Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a20
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    31   0.21 
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.84 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    29   0.84 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.4  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   3.4  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.9  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.8  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   7.8  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 153  RSPKMKPAEVKA*RS*RMNRSKIIHCSVENTRLDSTRTRSTIWRPKFR 296
            ++P   PAE+   +   +  ++ IH  +E  RLDS+R   +++ P  R
Sbjct: 1053 KTPNTSPAELLGIKFTTLPMAQYIHSELEALRLDSSRNEQSLFMPNKR 1100


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 275 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 421
           HL     AF  L  PK   E++    +    C   + NP  +   FV C
Sbjct: 229 HLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFC 277


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 305 RLLAPKGSLEVHEEAWN--AYPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELP 478
           RLLA   + EVH+   N   Y Y    +  PGY K   V   E+L+    GD   +  LP
Sbjct: 256 RLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILP 315

Query: 479 PEKLKT 496
            ++ KT
Sbjct: 316 QDQWKT 321


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 281 ASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTV 379
           ++K+P  I  L+  G+L V  +  + YPY +TV
Sbjct: 331 SAKMPVLIEDLSFTGNLRVKVKLIDKYPYAKTV 363


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 359  YPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELPPEKLKTREVVPIDI 520
            YPYC+ VL  P +  +      ESL       +YN+ E+P   L   + VPI I
Sbjct: 1389 YPYCQVVLNEPNFYFQVLPYKGESL------SKYNLAEIP---LLDSKKVPIQI 1433


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 425 ESLHLPDAGDQYNVHELPPEKLKTREVVPIDIANDPLPSADYKSETDPTKFKSTKTGR 598
           ++L+L      + VH   P   K+     +D  +  +P   Y+S+TD T+  +  T +
Sbjct: 260 KTLYLSVEDPSFMVHPRRPSATKSCSAA-VDCPHTTIPKPPYQSDTDLTELPTKSTAQ 316


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 431 LHLPDAGDQYNVHELPP--EKLKTREVVPIDIANDPLPSADYKSETD 565
           L  PD  D  N   LP   E +     +P+D+A+  LPS  Y S+ +
Sbjct: 83  LDFPDTLDLTNPDALPVLGESIVNPISLPVDVASPFLPSECYPSKVE 129


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 482 EKLKTREVVPIDIANDPLP--SADYKSE 559
           E  K   ++PI++  DPLP  S+D +SE
Sbjct: 810 EAEKVYTILPIEVPTDPLPNYSSDVESE 837


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 516 SMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSFM*PGFVSTVLQYG 361
           ++GT +   ++SG   +T    PASG  S ++ + + +    G V+T LQ G
Sbjct: 253 AVGTVTTT-TYSGSVEYTTTLVPASGSVSGTVEVVEPAV---GTVTTTLQSG 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,404
Number of Sequences: 5004
Number of extensions: 61168
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)