Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b07
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    29   0.67 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    29   0.88 
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    26   4.7  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   6.2  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   6.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.2  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 330 TPRFLNIAEFVTSFLYCLTDMSELTS 253
           T RFLN+ +F    + CLT+++ LTS
Sbjct: 239 TNRFLNVPDFRNVTIECLTEIASLTS 264


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +2

Query: 176 EKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVTN---SAMFRKRGVVSD-T 343
           E+ HN T +  K FAY+++ +         +  V++YK +V N     MF++ G+ SD +
Sbjct: 359 EQLHNSTDLLKKAFAYTSEVF---------EKIVEEYKNIVQNDFYDLMFKRVGLPSDSS 409

Query: 344 DTVTAANYLGLIEMFKDQFDN 406
           + +   + L ++E ++    N
Sbjct: 410 NKILITDLLQILEDYELDMPN 430


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 232 FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 125
           +G++    G   +N    +GKG  +H   YM++ +W
Sbjct: 89  YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 365 YLGLIEMFKDQFDNINVRNLIANNQTF 445
           YL + E+ K + +++ +RN +A  QTF
Sbjct: 70  YLYISEILKSKAESLRIRNSLATLQTF 96


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 717 PNCCLSNALDMLAKILNSL-YKRISVIK 637
           P+ C  NA+D+L K+L  +  KRIS I+
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIE 302


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 LKPLPKNVTTLRSSSP 209
           + P+P NV TLRSS P
Sbjct: 383 IPPIPSNVETLRSSLP 398


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 22  VIRVEAKNDYSLLACTAV-YAYCCKCGQYIGRVSYASLQP 138
           VI +E K +        V + +CC+C  YIG    +S +P
Sbjct: 50  VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEP 89


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 86  AVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNS 265
           +V + NI ++ P P+ SH+          +   +  T V P     +T T     T VNS
Sbjct: 60  SVTSTNITSIVPPPSTSHNSTTTTVPPTTS--MNTTTTVPPTTSLNTTTTTAPPTTHVNS 117

Query: 266 DMSV 277
             +V
Sbjct: 118 TTTV 121


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 221 YSTKTYCGNITEVNSDMSVKQYK--KLVTNSAMFRKRGVVSDTDTVTAANYLGLIEMF 388
           ++   + G++    S  S  QY+  +L+T+S+ +R   +V   +T+ AA   G+I +F
Sbjct: 653 FTDLVFYGHVDGKISIFSKTQYRFLELITSSSFYRICSLVGVGNTLWAAYTTGMIYVF 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,676
Number of Sequences: 5004
Number of extensions: 64217
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)