Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b02
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   159   2e-40
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.45 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.2  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   5.5  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.6  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  159 bits (386), Expect = 2e-40
 Identities = 73/122 (59%), Positives = 100/122 (81%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 412 RR 417
           R+
Sbjct: 120 RK 121


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 339 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 190
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 221 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 307
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 340 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 462
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 462 VFTLVFAKCSQSALCSAIEDCFAVFIH 382
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +3

Query: 27   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 146
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,978
Number of Sequences: 5004
Number of extensions: 45208
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)