Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a09
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   3.0  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   4.0  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   9.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.1  

>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 500 FSAQDPLQTATLE-VNIWRLLSRSYCQPVIRFTRG 601
           FS  +   TA+ + VN +RLL R + QPV+  T G
Sbjct: 25  FSNFNRYSTASHDNVNAFRLLMRRFAQPVVIITSG 59


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 408 PSLILPIAFKQYF 446
           PSL  PI+FKQYF
Sbjct: 467 PSLFTPISFKQYF 479


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 341 EDITPHSVD*FETLSNWDKIKRNEMT*DSHGVNMT*TQQSGGF 213
           ED+ P+S   FE LSN + +++ +    ++  NM       GF
Sbjct: 430 EDVRPYSFSEFEKLSNEEDMRQIDFAVSNYIDNMDLDSSDCGF 472


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 181 KILKSYVQWFCFTIPHLCT 125
           K++   VQ+F F I H CT
Sbjct: 146 KMMHRLVQYFAFCIDHFCT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,052
Number of Sequences: 5004
Number of extensions: 46976
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)