Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a15
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    23   4.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   4.1  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    23   5.4  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    23   7.1  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    23   7.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    22   9.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    22   9.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    22   9.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    22   9.4  

>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 140 LFLFIYISPYLAHLWKTES 84
           LFL +Y++ YL   W+ +S
Sbjct: 39  LFLLVYVTRYLNLFWRYKS 57


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 52  GLLWLATHYYFDSVFHKCAK 111
           G++ L+T  Y  S+F KC K
Sbjct: 453 GIIALSTKLYTGSIFPKCEK 472


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 156 YITLIFIPFHIYKPIFSTFVENRIKIIM 73
           Y T +  P H+Y+  +    + R KII+
Sbjct: 111 YKTNVLGPIHVYQAFYPLIKKGRSKIIV 138


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 196 VLLKIILNIQVQRLHNINIYSFSYI*AHI*HICGKQNQNNNELLAIED 53
           VL+K +   +  R  N+   SF Y    + +IC  +  +  +L+AI++
Sbjct: 124 VLIKAMKQFK-DRSENVAFTSFRYALFLVYYICRSRRLSPTDLVAIDE 170


>SPBP22H7.09c |mis15||kinetochore protein Mis15
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 10 IQKLLNRF**DFYAGLL--WLATHYY 81
          IQKLLNRF  DF   L   W+    Y
Sbjct: 17 IQKLLNRFPRDFLVKLCVEWIQKQTY 42


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 157 LHNINIYSFSYI*--AHI*HICGKQNQNNNELLAIEDQHKSLIKI 29
           + N+  +S  ++   +H  +ICG  N NN  +L    Q  + +K+
Sbjct: 191 IENLATFSTKFVALSSHKNYICGLTNDNNLYILQHSHQAGTKLKV 235


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 91  QNQNNNELLAIEDQHKSLIKICSVVFE 11
           Q++  NEL A+ +Q+K  ++  S+ F+
Sbjct: 847 QSELKNELYALLEQYKKQLRCSSLNFK 873


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 29  DFNKTFMLVFYG*QLIIILILFSTNV 106
           D ++   +VFYG  +++++ LFS  V
Sbjct: 439 DLDEIVGMVFYGRYIVLLMGLFSMYV 464


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 202 NYVLLKIILNIQVQRLHN 149
           N  LLK +L + +Q  HN
Sbjct: 139 NMALLKTVLEVNLQLFHN 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,097
Number of Sequences: 5004
Number of extensions: 13937
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)