Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0022
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   1.7  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   4.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   5.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   9.3  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    24   9.3  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 440 HKNYLNMVWVSCQGENPADRENIGPIQY-LPHRGFP 336
           HK  +  V  SC  ++ +++ + G ++Y +PHR  P
Sbjct: 450 HKKCVTKVLASCIAQSNSEKSDFGGLRYRIPHRFEP 485


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 362 VWDQCSRDQLGSR 400
           +WD CSRDQ+  R
Sbjct: 158 IWDACSRDQIEQR 170


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 365 WDQCSRDQLGSRLGRKPKPCLGSSYD 442
           W   +RD L +RL  KP P L +  D
Sbjct: 436 WSSGTRDFLVTRLANKPTPTLDAFID 461


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 137 CLLFVLSTRSTSRCVQSPWLQVS 205
           C+L  LST ST R +   W++ S
Sbjct: 250 CILKALSTSSTKRNLHLLWIEAS 272


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 347 RGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGM 252
           R FP     +TN+E YL P    HL R K G+
Sbjct: 377 REFPNASEEHTNKEAYLLP----HLFRTKLGI 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,717
Number of Sequences: 5004
Number of extensions: 35713
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)