Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.40 
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    29   0.71 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   1.6  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   3.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.6  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   6.6  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    25   8.7  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 179 YKRIL*NDG--FIQFLFYISHFYYYNLRFSL-PSNHVSHFNYIDFIFFESD 322
           YKR+L N+   F + + Y+ HF    L  +  PSN V++ NY + + F  D
Sbjct: 494 YKRLLYNEWERFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRD 544


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 218 LFYISHFYYYNLRFSLPSNHVSHFNYIDFIFFES 319
           L Y++  Y    + SLP +H  ++  I ++FF++
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFFQA 108


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 497 KDIIKNSNEKPYEYLIEAPIRLPSPANTGVSLQCSLYHFHDQYLS 363
           +DII NS +KP   +      LP  + +  SL  S + FH  +LS
Sbjct: 17  QDIISNSYQKPLSLVDSTDRALPDSSLS--SLSRSTFQFHKHHLS 59


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 88  VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTY 189
           +RF K  +  ++I     A+C  NY +R FIQ Y
Sbjct: 3   IRFLKRLRAPLYIQN---AYCSKNYFYRSFIQYY 33


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 403 NETPVFAGLGRRIGASIRYS*GFSFEFFIMSFLV 504
           N T  F+G+  R+  S+     FSF FF++  L+
Sbjct: 545 NSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLI 578


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 125 IKTTVFFSFLNLTPYNY*YWMN 60
           IKT VF SF N  P  +  WM+
Sbjct: 129 IKTEVFKSFFNSMPKEFEVWMS 150


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 251 LRFSLPSNHVSHFNYIDFIFFE 316
           LR SLP N +  F Y+DF+F +
Sbjct: 163 LRRSLP-NVIPSFEYLDFVFID 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,780
Number of Sequences: 5004
Number of extensions: 40506
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)