Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0004
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    29   0.39 
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   6.3  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 378 CLYFNQASNPSKQSNVMHRHIINFI--KFIW 292
           CLYF    NP K S V++ H++  +  KFI+
Sbjct: 584 CLYFAVCDNPYKPSQVIYDHLLGHVDSKFIF 614


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 302 FIKFMICLCITLLCLDGFEAWLKYKHRTACLERLSTYNGKKIILATKQLKDWFV---NKW 472
           F+KFMIC C+    + G E+     +R   LER+    G  + + T  L  + +   N+W
Sbjct: 391 FLKFMICSCM----VKG-ESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRW 445

Query: 473 CEFIYIRQTNHTKAFLLAN 529
            E ++ R  N  KA ++ N
Sbjct: 446 SE-VWRRWDNLRKAGVVFN 463


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 349 WI*SLVKIQTQNCVFGKTFNLQWKKNN 429
           WI + + I     VFG T  L WKK N
Sbjct: 425 WIITFIGIALGPAVFGITLTLFWKKMN 451


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 285 THTKNITLLIIINDTDSQICFHRIISSNKP 196
           T+TK +T LII+N+ D     +R      P
Sbjct: 36  TYTKTLTSLIIVNEGDEPQNTYRYFQQTSP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,790
Number of Sequences: 5004
Number of extensions: 49830
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)