Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0039
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   2.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.6  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 586 DKQGDSSIMFK*IKKNGIRKVCMK-HKALKLNVKKPTSIRPFEEIS 452
           DK+ D ++    I+K  + K     H   K NVKK  S   F+EI+
Sbjct: 180 DKRKDQTLFLCTIRKEALEKTIFPLHNWTKENVKKQASSAGFKEIA 225


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 318 LSYQPIKIAVVSFLWNLLPQVHSELIKYKKKYRKAICVCRPKE 446
           L +QP KI   S  ++ L ++  ELIK  K Y   +C C   E
Sbjct: 324 LGFQPYKITYSSDYFDKLYELAEELIKRDKAY---VCHCTDAE 363


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 247 VRLSTEKIPRCFNYYICIFLYP 312
           + L+T K+    NY I + LYP
Sbjct: 647 MELNTNKLANAINYLISLILYP 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,337
Number of Sequences: 5004
Number of extensions: 52751
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)