Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0038
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   2.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   3.3  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   4.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   5.8  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   7.7  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 521 TKTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLLTCANSVLS 393
           T+   + ++ + S   R+R +  +RP VS PSSLL   +  L+
Sbjct: 99  TRRGDIHSSVQMSTPSRRREVDPQRPGVSTPSSLLFSGSDALT 141


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 301 KTVSTPCFSITHQNEHREI-NDSRKISQKSN 212
           +TVS+PC SI+ +  + +I  D   IS K+N
Sbjct: 341 RTVSSPCASISSKRSYGDIAQDCSYISSKTN 371


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 464 CISVRRPLVSFPSSLLTCANSVL 396
           C+S+  P ++FP  + TC+  V+
Sbjct: 444 CLSILLPFLTFPLVMFTCSRKVM 466


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 632 KYNLEGKNKIF--ISSVHHCLPPLPRQHWSFEPDNFIHHTKTDQLPTAREQSDQHR 471
           K ++E + + F   S VH   P  P +H S EP N        +LP+  + S Q R
Sbjct: 281 KTSVENQERTFNLTSDVHLDSPTSPSKHSSIEP-NTSQEDSFQELPSLNKLSIQSR 335


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
 Frame = -1

Query: 677 HLCTCILSRPHGRYFKYNLEGKNKIFISSVHHCLPPLPRQHWSFEPDNFIHHTK-TDQLP 501
           +LC C  S P    F Y  E   + + S     L P  R +   + D F+  +K     P
Sbjct: 63  YLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTP 122

Query: 500 TAREQSDQHRKRCISVRRPLVSFPSSLLTCANSV-LSADSSLNCVYRS 360
            A +  D+       V R +      LL   +S+   AD S +  Y S
Sbjct: 123 RANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,104
Number of Sequences: 5004
Number of extensions: 54418
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)