Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0034
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   179   3e-46
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   3.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  179 bits (436), Expect = 3e-46
 Identities = 93/207 (44%), Positives = 122/207 (58%), Gaps = 1/207 (0%)
 Frame = +2

Query: 35  FTPTSSNIAHRGRSV-ICYFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 211
           + P SS  +H G ++ +   SL L GISS                   S  Q+PLF  A+
Sbjct: 136 YPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAI 195

Query: 212 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 391
            IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+
Sbjct: 196 MITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIM 255

Query: 392 PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 571
           P FG++SHII      K  F                 +V +HH+FTVG+D+DTRAYF++A
Sbjct: 256 PAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAA 314

Query: 572 TIIIAVPTGIKIFR*LATIHGTQINYN 652
           T++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 315 TMVIAIPTGIKIFSWLATLTGGAIQWS 341


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 8   GCRNRHEGQFTPTSSNI 58
           GC  RH+G F P+S N+
Sbjct: 55  GCAFRHDGPFIPSSENL 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,964
Number of Sequences: 5004
Number of extensions: 32415
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)