Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0026
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   1.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   4.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    24   5.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   9.8  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    23   9.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    23   9.8  

>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 233 PLPVPVSVQLTPLVARALRP 174
           P P PV+V + P +AR LRP
Sbjct: 247 PPPPPVAVVIDPKLARILRP 266


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 209 ERLPELAGDNRPKCGDYVSEFTLQPGDV 292
           E+ PE  G +R  C D V +F +  GD+
Sbjct: 59  EQRPESLGRDRDWCVDLVPKFLMANGDL 86


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 300 PSPTSPGCSVNSLT*SPHLGLLSPASSGKR 211
           P+P+SP  + NS++ SP L  L+   +  R
Sbjct: 277 PTPSSPTGTPNSMSKSPSLSSLASTGASYR 306


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 44  SARGTIVVLCKNFSQPAVVSTSDISSSDGNNHQAVQRLLSS 166
           SA+  ++ + +++S      T+D  +  GN  + + RL +S
Sbjct: 81  SAKKNVIPITRSYSTTFFSKTNDQPTVTGNQDKPISRLRAS 121


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 276 SVNSLT*SPHLGLLSPASSGKRSAYXXXXXXXXXXXXLERSL 151
           S+ S   +P+L LL   SSGKR  Y             ERS+
Sbjct: 245 SLESEANTPNLPLLYDKSSGKRVEYSAFNFLALYENGEERSM 286


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +2

Query: 32  GCRNSARGTIVVLCKNFSQPAVVSTSDISSSDGNNHQAVQRLLSSXXXXXXXXXXXXXXE 211
           GC+N      V   +    P  VS++  SS+      ++QRL S+              +
Sbjct: 51  GCKNGTSEPNVFKARPIPPPRQVSSTIGSSTGRKVSGSIQRLASNFKNPSNPHADVSKID 110

Query: 212 RLP 220
           RLP
Sbjct: 111 RLP 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,290
Number of Sequences: 5004
Number of extensions: 22959
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)