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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0025
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...   144   6e-36
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    73   3e-14
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    72   5e-14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    62   4e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    58   1e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    54   1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    54   2e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    50   2e-07
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    49   4e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    49   4e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    48   1e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    48   1e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    44   2e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      43   3e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    43   3e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    42   6e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    41   1e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    40   3e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    39   4e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    39   6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    39   6e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    38   8e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    37   0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    36   0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    34   0.017
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    33   0.038
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    33   0.038
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    29   0.62 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   0.82 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.82 
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    28   1.1  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   3.3  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   3.3  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   7.7  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.7  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score =  144 bits (350), Expect = 6e-36
 Identities = 66/99 (66%), Positives = 84/99 (84%), Gaps = 1/99 (1%)
 Frame = +3

Query: 21  EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVC 197
           EQ+K E++ +YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M  E G+SKGFGFVC
Sbjct: 351 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 410

Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
           +++PEEA KAVTEMN R++  KPLYVALAQRKE R++ L
Sbjct: 411 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449



 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = +3

Query: 63  NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 239
           N+++KNLD  ID++ L   F+ FG I S KV +++ G +KG+GFV F S E A  A+  +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228

Query: 240 NGRIVGTKPLYVALAQRKEDRKA 308
           NG ++  K +YV     + +R++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQS 251



 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
 Frame = +3

Query: 12  STREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFG 188
           S RE+       +    N+Y+KNLD  I ++     F  FG ITS  ++ +   + +GFG
Sbjct: 245 SRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFG 304

Query: 189 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
           FV +++ E A KAV E+N +    K LYV  AQ+K +R+  L
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
 Frame = +3

Query: 63  NLYVKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 230
           NLYVKNLDDT+     +L   F+PFG+I S+ +      G SKG+GFV F   E A +A 
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442

Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
             +NG +VG K ++V  A+RK DR
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDR 466



 Score = 29.9 bits (64), Expect = 0.27
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-----RSKGF---------GFVCFS 203
           +YV N+D  + DE + K F+ +G + S    L D      ++K F         GFV F 
Sbjct: 19  IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78

Query: 204 SPEEATKAVTEMNGRIVGTKPLYV 275
           + E   + + +  G  +G + L +
Sbjct: 79  NAESIEEVLKDAKGMTLGQRKLTI 102


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
 Frame = +3

Query: 63  NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 230
           NL+VKNLDD I  + ++L + F+ FG I S  +        SKG+GFV FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479

Query: 231 TEMNGRIVGTKPLYVALAQRKEDRKAHLT 317
             +NG + G K L+V  A+++EDRK  L+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLS 508



 Score = 35.5 bits (78), Expect = 0.005
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 30  KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGT------ITSAKVMLEDGRSKG-FG 188
           K++R T+   +++YV NL  T     L + F PFG       ++  K    D +S   F 
Sbjct: 10  KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69

Query: 189 FVCFSSPEEATKAVTEMNG 245
           F+ F +   A  A+  +NG
Sbjct: 70  FITFENKCSADNAIASLNG 88


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
 Frame = +3

Query: 57  GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
           G NL+V NLD  +D+  L   F+  G +  A  +  D  GRSKG+GFV + S E A  A+
Sbjct: 98  GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157

Query: 231 TEMNGRIVGTKPLYVALAQRKEDR 302
             MN + +  KP+ V+ A ++E +
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGK 181


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 242
           L+V NL + ++DE L + F+ + ++   KV+ + +G+++GFGFV F   ++  KA  E N
Sbjct: 32  LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91

Query: 243 GRIVGTKPLYVALA 284
           G+ +G++P+ ++ A
Sbjct: 92  GKYIGSRPVKLSRA 105


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +3

Query: 57  GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 230
           G +L+V  +   + ++ L++ F+ FGT+T  ++M E     S+GFGF+ FS+ EEAT A+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159

Query: 231 TEMNGRIVGTKPLYVALAQR 290
             +N +    + L V  A+R
Sbjct: 160 DNLNSQEFYGRVLNVQKAKR 179


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT-- 233
           ++V  L   +DD+ L +EF  +GTI  A+V++  + GRSKG+G+V F +PE A  AV   
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324

Query: 234 ---EMNGRIV 254
              E++GR+V
Sbjct: 325 GTKEIDGRMV 334



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
           ++V NL     ++ L   F   G I S ++  +   GR KGFG+V FS  + A K V EM
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EM 426

Query: 240 NGRIVGTKP 266
           NG  +  +P
Sbjct: 427 NGHFIAGRP 435


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
           +YV NL     D  L   F   G++  A++  E  GRSKGFG V F +  +A  ++ ++N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341

Query: 243 GRIVGTKPLYVALA 284
           G   G +PL ++ A
Sbjct: 342 GYRYGGRPLQLSYA 355



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 108 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 284
           L+  F   G++  A + + ++GRS+G G V  SS +EA  A+  ++      + L V L 
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257

Query: 285 QRKEDRKAH 311
               DR AH
Sbjct: 258 ----DRFAH 262



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEM 239
           +YV NL   +    L++     G + + +++ L +G SKG   + +S+ EEA  A+ T  
Sbjct: 68  VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127

Query: 240 NGRIVG 257
           N + +G
Sbjct: 128 NQKFMG 133


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 23/82 (28%), Positives = 48/82 (58%)
 Frame = +3

Query: 51  YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
           Y+G  LYV N+D  ++++ +   F  +G + S ++     + KGFG+V  ++ ++A  A+
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813

Query: 231 TEMNGRIVGTKPLYVALAQRKE 296
           +   G+ +G + L V L++ +E
Sbjct: 814 SAA-GKQLGNRVLNVVLSKPRE 834



 Score = 28.3 bits (60), Expect = 0.82
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = +3

Query: 63   NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
            +L V N+D T+++ RLR  F  +G +   +V+L     +G   V F    +A KA   + 
Sbjct: 875  SLGVTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-AVVEFLDIHDAGKASLALE 930

Query: 243  GRIVGTKPLYV 275
            G  +G + L++
Sbjct: 931  GHEIGGRLLHI 941


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
 Frame = +3

Query: 27  LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLEDGR--SKGFGFVC 197
           L+ + +++    +++V +L   +++  +   FA  + +  SAK+M +     S+G+GFV 
Sbjct: 175 LREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234

Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
           F+   +   A+ EM G+I G +P+ V LA  K   KAH+
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKS--KAHV 271


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
           L V N+   + DE ++  F PFG I    +  +D  RSKGFG++ + +P  A  A+ +MN
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401

Query: 243 GRIVGTKPLYVALAQRK 293
           G  +  + + V L   K
Sbjct: 402 GFDLAGRNMRVCLGNDK 418


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 72  VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
           +K + D  +  R R   +   P+  I   K+  E  R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279

Query: 243 GRIVGTKPLYVALAQRKEDRK 305
           G+ VG   L V  A  +ED++
Sbjct: 280 GKQVGDLTLVVKSAVFREDKQ 300



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKA 227
           ++V  L  +     +R  F   GT+    +     R        G  FV F++ E+  KA
Sbjct: 46  VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105

Query: 228 VTEMNGRIVGTKPLYVALAQRKEDR 302
           +  +NG+ +  + + V  A+  +++
Sbjct: 106 IETLNGKTLDDREIVVQKARPVQEQ 130


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
 Frame = +3

Query: 9   SSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-----GR 173
           ++T E++ +E +       +YVKNL+ +   E  +K F P     SA +  +      G+
Sbjct: 602 ATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGK 661

Query: 174 --SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
             S GFGFV F     A  A+  MNG ++    L + L+ +  D  A +
Sbjct: 662 YLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
           L+++NL  +  ++ L+  F PFG +    + ++      KGF ++ F   ++A +A  E+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384

Query: 240 NGRIVGTKPLYVALAQRK 293
           + +    + L+V  A+ +
Sbjct: 385 DAKPFQGRLLHVLPAKAR 402



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 230
           + +KN+    D E+L             IT   V   ++G S+ F F+ F + E+A KA+
Sbjct: 4   IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63

Query: 231 TEMNGRIVGTKPLYV--ALAQRKEDRK 305
             +N   V T  + V  AL  R  + K
Sbjct: 64  RYLNKSYVETSRIEVHRALDYRSANEK 90


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +3

Query: 63  NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
           ++YV N+D ++  E L+  FA  G++    ++ +   G  KGF ++ FS P     A+  
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL- 114

Query: 237 MNGRIVGTKPLYV 275
           +NG ++  +PL V
Sbjct: 115 LNGSMLHERPLKV 127


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = +3

Query: 9   SSTREQLKSERLTRYQGVN--LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG 182
           +ST  +  ++ L     +N  ++V  L   + ++ L+  F PFG I + K+       KG
Sbjct: 278 TSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF----GKG 333

Query: 183 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 278
            GFV +S    A KA+  M G +VGT  + +A
Sbjct: 334 CGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
 Frame = +3

Query: 63  NLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 233
           +++V +L  T +D  L   F   + + TSAK++++   G S+ +GFV FSS +E   A+ 
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242

Query: 234 EMNGRIVGTKPLYVALAQRK 293
            M G +   +PL +++A  K
Sbjct: 243 HMQGYLCQGRPLRISVASPK 262


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 239
           +Y+ NL   + ++++ +   PFG + S +++  + DG SKGF F  F +P +A  A++ +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371

Query: 240 NGR 248
           +G+
Sbjct: 372 DGK 374


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE- 236
           +++  L+    D+ LR  F  FG +    VM +   GRS+GFGF+ F +P+   + +++ 
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224

Query: 237 --MNGRIVGTK 263
             ++G+I+  K
Sbjct: 225 HHLDGKIIDPK 235



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
           ++V  +     +E  R  F  FG +  A +M++   GR +GFGFV + + E A +A    
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQ 307

Query: 240 NGRIVGTKPLYVALAQRKED-RKAH 311
               +  KP+ V  A  K   R +H
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSH 332


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 63  NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 236
           N+Y++ L     DE L      FG ++S+K ++  E    KG+GF CF   + A   ++ 
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISA 356

Query: 237 M 239
           M
Sbjct: 357 M 357



 Score = 29.1 bits (62), Expect = 0.47
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 54  QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
           +  NLY+ NL    ++  +   F P   I++  +     +S+G GF      + A   + 
Sbjct: 382 ESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIIN 441

Query: 234 EMNGRIV--GTKPLYVALAQRKEDRK 305
           + N  ++     PL +  A   + +K
Sbjct: 442 KFNNFVLDPALPPLQIRFADSTDQKK 467


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
           +YV N+   + +E++   F   G + S ++++  E G+ KG+GF  +  P  A  AV  +
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66

Query: 240 NGRIVGTKPLYV 275
           N    GT+ L V
Sbjct: 67  NNYDAGTRRLRV 78


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 230
           L+V NLD    D  L++ F   G I   ++M  ED G+ KGFGFV F   +   KA+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   RRSSTREQLKSE-RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGR 173
           R  S RE   S  +  R     L V NL D   +E LR  F  FG I    +    E GR
Sbjct: 182 RAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241

Query: 174 SKGFGFVCFSSPEEATKAVTEMNG 245
           +KGF FV +   + A KA   ++G
Sbjct: 242 AKGFAFVSYYDRDCAIKARDRLDG 265


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 54  QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATK 224
           +G+   +   ++ +D     K     G +  AKV  E    GRSKGFGF+ F S + A  
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554

Query: 225 AVTEMNGRIVGTKPL 269
           A+  +NGR +  K +
Sbjct: 555 ALRWLNGREITVKKI 569



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDD-ERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEM 239
           L ++NL  +I   + L   F+ FG +   K+  + G R  GF FV     + A +A+  +
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168

Query: 240 NGRIVGTKPLYVALAQRKE 296
           NG  +  +P+ V  A  K+
Sbjct: 169 NGTEIDGRPIAVDWAVSKD 187


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +3

Query: 63  NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
           N+Y+ N DD++  ERL+++F  FG I          R K   FV F+S   A  A+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 165 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 281
           +GRSKG   + FS P +AT+A  +  GR+V GT+ + V +
Sbjct: 92  NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 242
           LYV    D +    L  EF PFG +    + +   R S+ F FV +    +A  A  E++
Sbjct: 9   LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68

Query: 243 GR 248
           GR
Sbjct: 69  GR 70


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 54  QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
           +G  + V  +     +E++   FA FG + +  + L+   G  KG+  + +++ E+A KA
Sbjct: 8   EGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67

Query: 228 VTEMNGRIVGTK 263
           V E N  ++  K
Sbjct: 68  VDEKNLSLLDEK 79


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 239
           +Y+ NLD  ++++ +   F+ FG      ++   E G+SKGF F+ +        AV  M
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
           + VKN+  +++ + L   F   G     +     ++G  +G  F  F  PEEA   V  +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263

Query: 240 NGRIVGTKPLYV 275
           NG  +  + L V
Sbjct: 264 NGYEINGRRLRV 275


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 417 PAPRYYGPAQMTQIRPTTPRWNAQPPVRP-STQAASGHIANFMQP-TYRPA 563
           P+P YY P       P    W+    VR  S+  A GH  +  QP T  PA
Sbjct: 29  PSPNYYYPPVAQGHYPVNNMWSLPSNVRVISSHGAPGHQTSASQPSTVMPA 79


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
           + +KN+  ++  E L K F         +     ++G  +G  F  F SPEEA   V  +
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293

Query: 240 NG 245
           NG
Sbjct: 294 NG 295


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSA--KVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
           + V+NL   +  E + + F  +G I      +  +   +KG+ ++ +   ++A  AV +M
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160

Query: 240 NGRIVGTKPLYVAL 281
           N   +  + L+V++
Sbjct: 161 NNAELDGEELFVSI 174


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 325 TCREWLVCACSKWAKYSSLVVQVDFLYHRSLQH 423
           T   + +C C  +  ++ ++VQV  LY ++L H
Sbjct: 288 TYENYYLCECDAFFLFTQMMVQVRDLYEKTLDH 320


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 6   RSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLEDG 170
           R++ ++Q++ E +     +NLY  + DD  D+E +      +   PF  + S K ++ DG
Sbjct: 188 RAAFKQQIREEFVKH--DINLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVDG 244

Query: 171 R 173
           R
Sbjct: 245 R 245


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +3

Query: 138 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 287
           +TS +++++    RS+GFG+V F + +  + A+  ++G  +  +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 66  LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEE 215
           +YV  L  +I+   L   F+ FG++++ +++ +    G  + F ++ F + E+
Sbjct: 7   IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 387 ASGFFVPSLPPAPRYYGPAQMTQIRPTTP 473
           A+GF +P L P    +GP +  QI    P
Sbjct: 2   ATGFKLPELAPVKSAWGPPETEQIGGDIP 30


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 15  TREQLKSERLTRYQGVNLYVKN 80
           T E++K+   +RY  V+LY+ N
Sbjct: 371 TEEEMKTVPKSRYDSVDLYISN 392


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 297 PPCVELVQHTMV*FLQYVHSS 235
           PP +E +Q T +  LQYVH +
Sbjct: 732 PPQLENIQGTTIQLLQYVHDN 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,506
Number of Sequences: 5004
Number of extensions: 45273
Number of successful extensions: 187
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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