Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0022
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    58   4e-10
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.16 
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   1.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   4.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.4  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   4.4  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    24   5.9  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    24   5.9  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   5.9  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    24   5.9  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    24   5.9  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 58.0 bits (134), Expect = 4e-10
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = +3

Query: 108 MPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLIL-SSQKKIELIQVQDSQVMIRARLL 284
           M +LLLDP +R WV LPI+ +  L+GI+RH  +++L SS KK+   ++++ +++ RA  L
Sbjct: 1   MQKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYAL 60

Query: 285 RENGKYLPRQSFAMRR 332
           R     L  +S   R+
Sbjct: 61  RACSNSLLPESIEARK 76


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +3

Query: 57   IKSITYDISEI*NLLSQMPELLLDPNIRFWVFLPIVIITFLVGIVRHYVSLILSSQKK 230
            + + T DI ++  LLS++P  LLD  + F V+L  V  T +  IV+  ++ ILS QKK
Sbjct: 1156 VNTNTADIDDLYRLLSKIPTNLLDLPM-FQVYLGCV-DTLIQTIVKQ-IAQILSKQKK 1210


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 144 WVFLPIV-IITFLVGIVRHYVS 206
           W+ LPI  I+  LVGI++HY++
Sbjct: 460 WIDLPIAFILGCLVGILQHYIA 481


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  IHILKNKINYLRHK*NIESAKPNARVTFRSKYPILGVST 157
           +H+ K K+N    + ++  AK +A +T   K P++   T
Sbjct: 480 LHLAKMKLNNKNDESSLSPAKSHAVITQAPKIPLISTFT 518


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 5/15 (33%), Positives = 14/15 (93%)
 Frame = +1

Query: 1    GHEGRFNLIFWLINS 45
            G+EGR+++++W++ +
Sbjct: 2085 GNEGRYDILYWIVRA 2099


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 157 GRNTQNRIFGSKSNSGIWLSR 95
           G+NT   +FGS +N G++ +R
Sbjct: 51  GQNTTQPLFGSNTNGGLFGNR 71


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 144 WVFLPIVIITFLVGIVRHYVSL 209
           WVFL + +I  ++ ++ +Y+S+
Sbjct: 64  WVFLNLGVIGIIITVIIYYISI 85


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = +3

Query: 138 RFW-VFLPIVIITFLVGIVRHYVSLIL--SSQKKIEL 239
           R W + +P+ ++ F + ++  +VSL++  SS+KK +L
Sbjct: 36  REWAITIPVAVMLFGICLIGTFVSLLMIKSSKKKSDL 72


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 187 IPTKNVIMTMGRNTQNRIFG 128
           IP +N I+++G NT+   FG
Sbjct: 492 IPDENTIISLGLNTRPTFFG 511


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 187 IPTKNVIMTMGRNTQNRIFG 128
           IP +N I+++G NT+   FG
Sbjct: 492 IPDENTIISLGLNTRPTFFG 511


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 221 RGQYK*YIVSHNSNQKCNYDNG*KHPK 141
           R QY+  I S++SNQ+   D G K  K
Sbjct: 452 RKQYEKTIASYSSNQRQEEDQGKKRKK 478


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 184 PTKNVIMTMGRNTQNRIFGSKSNSGIWL 101
           PTK +I++   ++   ++   +N+GIW+
Sbjct: 278 PTKEMILSSSADSSMIVWEPDTNTGIWV 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,411
Number of Sequences: 5004
Number of extensions: 26906
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)