Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0017
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    54   2e-08
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   3.4  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   6.0  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    25   7.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
 Frame = +1

Query: 220 VLVKAEWISVDPYLRA------YNSYQAVPYDQ----FSYQVGVVVQSRDSNYPVGTRVV 369
           VL+K  + SVDPYLR       + SY   P +     ++  V  VV+S    Y  G  VV
Sbjct: 46  VLLKNIYTSVDPYLRMRMQSPKHASY-IPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVV 104

Query: 370 AHKGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICK 543
              GW + Y F          P +  YKLP +        VG++GMP  TAY G   I K
Sbjct: 105 FVSGW-EEYTFVSKQALGFLQPINNPYKLPLIDF------VGSLGMPSQTAYCGLKHIGK 157

Query: 544 PKAGETVVVT 573
           PKAGET+ ++
Sbjct: 158 PKAGETIYIS 167


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 259 LRAYNSYQAVPYD---QFSYQVGVVVQSRDSNYPVGTRVVAHKGWCDHYVFTPSTQPNTP 429
           L AY +YQ V Y+   + SY+  ++    +     G  V+  + W    +  P++     
Sbjct: 133 LNAYFAYQVVGYNGTGRVSYREALLAVFVEGFIFTGLTVIGLRQWLARVI--PASLKFAT 190

Query: 430 KDRIYKLPDLQGLSPSLGVGAVG 498
              I     + GLSPS G+G +G
Sbjct: 191 GAGIGLYLTIIGLSPSAGLGVIG 213


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
 Frame = +1

Query: 247 VDPYLRAYNSYQAVPYDQFSYQVGVVVQSRD---SNYPVGTRVVAHKGWCDHYVFTPSTQ 417
           +D YLR       +PY       GVV    D   +++ VG RVV    +  +  +T    
Sbjct: 44  IDTYLRTGLYTAPLPYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYT---- 99

Query: 418 PNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKAGETVVV 570
            N P   + K+ +   L  +    A  + G TAY    E    K G+TVVV
Sbjct: 100 -NVPTTLVSKVSEKIPLKIA---SAALLQGLTAYTLIEEAYPVKTGDTVVV 146


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +2

Query: 209 STARSSLKPNGSASTRI*GLTTLTKLYPTTSSVIKSVLLSNQGIATIR*ERELLRTKDGA 388
           S A SS   +  AS+     T+ T     TSS + S   SN   ++      L  T    
Sbjct: 148 SLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSAT 207

Query: 389 TTTSSL 406
            T+SSL
Sbjct: 208 ATSSSL 213


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 403 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 498
           TP  QP  PK R ++L PDL  ++   G  ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 LCAQQLSFLPDSCYPLIGQQH 317
           LC  + SF  D   PL+G QH
Sbjct: 240 LCGSENSFNDDGFNPLVGSQH 260


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
 Frame = +1

Query: 178 ELVEFVIPPLIDGEVLVKAEWISVDPYLRAYNSYQAVPYDQFSYQVG---VVVQSRDSNY 348
           E+    IP   +GE+LVK E  +++P     N+    PY  +   VG          +++
Sbjct: 24  EIQSVPIPQPKNGELLVKIEAAAINP-SDLMNATGGFPYTVYPRIVGRDYAGTVISGASH 82

Query: 349 PVGTRVVAHKGWCDHYVFT-PSTQPN---TPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 516
            VGTRV    G      FT   T       P+    ++P     + +    +VG+P  TA
Sbjct: 83  LVGTRVFGTSG--SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEA---ASVGVPFTTA 137

Query: 517 YFGFLEICKPKAGETVVV 570
           Y   L   + K  + V+V
Sbjct: 138 YLA-LSRGETKGSDIVLV 154


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 368 LRTKDGATTTSSLLVRNLTLQRIVFINYQICRDCRRRWA 484
           LR+   A  T   ++RN +       ++ +CRDC  + A
Sbjct: 55  LRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYAKQA 93


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 159 YTFKVVLHDVLPS*GHLDFCGSLSF 85
           YT+ ++ H+VL S  +  F GSL F
Sbjct: 712 YTYPLIEHEVLDSKNYFVFKGSLLF 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,889
Number of Sequences: 5004
Number of extensions: 50012
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)