Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0009
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...   141   6e-35
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    44   9e-06
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.9  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   3.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   5.9  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    25   7.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score =  141 bits (341), Expect = 6e-35
 Identities = 67/114 (58%), Positives = 84/114 (73%)
 Frame = +2

Query: 137 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 316
           E    YY  KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR         GSYVGEV+
Sbjct: 14  ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73

Query: 317 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
           K M K KVLVKVHPEGK+VVD+  ++DI ++  N RVALRN+SY L KILPNKV
Sbjct: 74  KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKV 127


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = +2

Query: 293 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 472
           G  +GEV+K +D ++ +VK     ++VV    NVD + +    RV+L   + T+ +ILP 
Sbjct: 53  GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112

Query: 473 KV 478
           +V
Sbjct: 113 EV 114


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 408 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 310
           TS+IS+  S S T++PS  +   +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 170 EELQLIVAEKSQNLRRLQAQ 229
           EEL+LI   K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 253 NFSVEFITLGLKTTKIL 203
           NFSVEF  L L TT IL
Sbjct: 379 NFSVEFTKLPLSTTPIL 395


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 302 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILP 469
           +G+ ++ +D+   +V       +VV +   +D   +  +  VAL+  S  L  ILP
Sbjct: 58  IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILP 113


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 218  DDEDFEIFRRQ*AVTLQSWLCSTGENPHP 132
            D ED EIF  Q  +++ S L    E+P P
Sbjct: 1007 DIEDNEIFTNQSTMSVPSMLVENEESPKP 1035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,931
Number of Sequences: 5004
Number of extensions: 33515
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)