Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0006
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 252 5e-68
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 59 6e-10
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.40
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.2
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.1
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.7
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.4
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 8.5
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 8.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 252 bits (616), Expect = 5e-68
Identities = 117/202 (57%), Positives = 153/202 (75%)
Frame = +2
Query: 107 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 286
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 287 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 466
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 467 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 646
+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187
Query: 647 KQVYDSGTXFAPEILDIKPEDL 712
+YD G F+PEILD+ EDL
Sbjct: 188 LTIYDQGNVFSPEILDVSEEDL 209
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 59.3 bits (137), Expect = 6e-10
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Frame = +2
Query: 44 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 223
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 224 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 388
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 389 ENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISK 526
E+ VQ AR GA+AP + VIPA G P + + L +PT +
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKN 176
Query: 527 GTIEIINDVHILKPGDKVGASEATLLNMLNI--SPFSYGLV 643
G + ++ D + G ++ + + LL + I + F GL+
Sbjct: 177 GVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLL 217
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 237 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 344
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 543 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 418
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 303 RAGLLSRWSLMALRIIVFFPMSTILEPR 220
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 381 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 256
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 550 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 428
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 477 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 307
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 306 SRAGL 292
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 396 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 235
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 273 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 452
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 453 PTTPAS 470
+TP +
Sbjct: 577 SSTPVT 582
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 301
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 550 IVDDFNSTL*NLGRDRKSL 494
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,643
Number of Sequences: 5004
Number of extensions: 70431
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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