Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0003
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   1.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   2.4  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   4.3  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    24   5.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   7.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    23   9.8  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    23   9.8  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    23   9.8  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 23  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 121
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 57  LFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVL 209
           L  +  +A + VT+    ++NG D FT     +V  +N   S   S  ++L
Sbjct: 145 LMPLETSAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVSTKKSIVTIL 195


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 96  NLSNVLKNGNDNFTARMFTEVV 161
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 164 FHYFGKHSGCEVIVS---IFEHIREICDGCHCRDGDSKQTNDCLH 39
           F  FG+H  CEV+++   +     EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +2

Query: 5   HEGHSRDAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKWKR*LHSQNVYR 154
           H+   R  GH H++  +++     G G  ++ L  A+++   + S+ +++
Sbjct: 146 HKNILRLYGHFHDEKRIYLILEFAGRGELYQHLRRAKRFSEEVASKYIFQ 195


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   HEGHSRDAGHKHEDNHLFVYYRHRGNGSRHKS 100
           H+G S D+ H H   H + ++ H  +G  H S
Sbjct: 7   HKGGSDDSTHHH--THDYDHHNHDHHGHDHHS 36


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 287 VREADSFQKLFMGFTIRS*S*LSERRQHRKCREDNAFPWIIFHYFGKHSGCEVI 126
           ++EAD  +K    + ++S +      Q  K  + + F +I+F YF K S  +VI
Sbjct: 76  MKEADYHRKFKSNYLLKSYT-----HQLVKEADGSEFVYILFPYFAKGSVAQVI 124


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 164 FHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTN 51
           F YF ++    +I+ + E ++ + D C     D K  N
Sbjct: 156 FTYFSENLARHIIIQVAEAVKHLHDVCGIVHRDIKPEN 193


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 105 NVLKNGNDNF 134
           N+L NGNDNF
Sbjct: 170 NILPNGNDNF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,093
Number of Sequences: 5004
Number of extensions: 23428
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)