Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0075
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...   182   5e-47
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   8.6  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.6  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score =  182 bits (443), Expect = 5e-47
 Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 6/181 (3%)
 Frame = +1

Query: 214 HDRVFTGSAGTGKSFLLKRIVAALPP------DVTMPTASTGVAACHIGGTTLHAFAGIG 375
           H   FTGSAGTGKS LL++I+  L        D    TASTG+AAC+IGG TLH+FAG+G
Sbjct: 326 HSIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTGLAACNIGGVTLHSFAGVG 385

Query: 376 DGSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEKLEAVARHIRKNDKPFG 555
               S++ L  +  K      +W + + LIIDE+SMVD    +KLE VAR IRK+ KPFG
Sbjct: 386 LARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAELMDKLEEVARVIRKDSKPFG 445

Query: 556 GIQLILCGDFLQLPPVVDKNKQKRFCFQSHCWDKCIELCFELKQVHRQTDQEFISILNSI 735
           GIQL+L GDF QLPPV +  K+ +FCF+S  W   ++    L  V RQ D+EF+ +LN +
Sbjct: 446 GIQLVLTGDFFQLPPVPENGKESKFCFESQTWKSALDFTIGLTHVFRQKDEEFVKMLNEL 505

Query: 736 R 738
           R
Sbjct: 506 R 506


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 683 FSSKQSSIHLSQQWD*KQNLFCLFLSTTG 597
           F + QS++HLS  W+  Q  F ++L   G
Sbjct: 630 FGAFQSNLHLSDSWEDFQKNFIIYLKKKG 658


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 623  FCLFLSTTGGSCKKSPQRIS*MPPNGLSFF 534
            + LFL  TG +    P R S + P+ LSFF
Sbjct: 2932 YALFLPVTGDATTFHPNRDSSVNPDHLSFF 2961


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 637 ENKISSVYSCPLLVVVVRNHHKESV 563
           EN+I S+   P  V V+RN  K++V
Sbjct: 245 ENRIHSIIGAPQPVTVIRNQVKQTV 269


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 190 QSAHRKPVHDRVFTGSAGTGKSFLLKRIVAAL 285
           + ++ KPV   V TG   +GKS +L RI+  L
Sbjct: 170 EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFEL 201


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 133 YGRARSKSSNSP--ADETHSTQSAHRKPVHDRVFTGSAGTGKSFL 261
           Y +  ++  N P  +D  HS++S HR PV   +    A  G   L
Sbjct: 14  YYKQNARMQNRPRFSDRKHSSKSKHRFPVDPSLQPDEADEGTRLL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,448
Number of Sequences: 5004
Number of extensions: 73187
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)