Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0034
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   0.80 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   1.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   2.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   3.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   4.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   9.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   9.8  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 122 GRCWMIGRPHAALPSARNLLCEAGSSIADRGG-DGGPTL 9
           G+ WM G     + +A  L CE GS+  D    D GP +
Sbjct: 511 GKSWMYGGMALRMAAALQLNCEQGSNPLDLDNIDSGPRI 549


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 343 SSFSMFHXGDSGLLXTCLACLEHRRSSAANTQNSPNV 233
           SS  M + G+ GLL   L     + ++ +NTQ+S N+
Sbjct: 525 SSVHMGYAGEGGLLSGALRAPSQQNNNNSNTQHSINL 561


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 59  HKGGCERLGVPRGASRSSSICRSHPEP 139
           H    ++LG P   S S S+ R +PEP
Sbjct: 499 HSSYSDKLGSPTILSTSFSLARPYPEP 525


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 22   PSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTSNCI 162
            P    S  L  A   +L A G   W L ++ HL       ST ++C+
Sbjct: 1547 PISVHSDQLTLAYASQLEASGQWLWSLFVLLHLENVETRTSTITSCL 1593


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 208  HCRA-HTSISNTCVLVGYNSMSLNRLWM 128
            HC    +SI+  CVL G   + L+ LW+
Sbjct: 1060 HCSGLGSSITRACVLQGVQQLWLSFLWL 1087


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +1

Query: 1    RQRSVGPPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTSNCIP 165
            RQ+    P+P  SA   P +    + +        +  ++P  S + ST    +P
Sbjct: 1253 RQKGTPSPAPVNSATSTPVAAPTAQQIQPGKQASAVSSNVPAVSASISTPPAVVP 1307


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   RSVGPPSPPRSAMLLPASQRRLRALGSA 90
           RS  PP PPRSA   P++ R+   L S+
Sbjct: 358 RSAPPPPPPRSA---PSTGRQPPPLSSS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,612
Number of Sequences: 5004
Number of extensions: 24689
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)