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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0018
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...   202   5e-53
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...   118   6e-28
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...   106   4e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    83   5e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    78   1e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    77   3e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    76   4e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    75   1e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    74   2e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    71   2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    70   3e-13
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    65   1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    64   1e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    64   3e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    62   6e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    60   4e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    59   7e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    58   1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    56   5e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    56   7e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    51   2e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    41   2e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    37   0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    37   0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    36   0.004
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    31   0.22 
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   2.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.0  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    27   2.7  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   4.7  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   6.1  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   8.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.1  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  202 bits (492), Expect = 5e-53
 Identities = 93/162 (57%), Positives = 116/162 (71%)
 Frame = +2

Query: 230 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 409
           N+ + DW + +L PF K+FY  H  V  RS  EV EYR   E+ V G+ V  P+  FEEA
Sbjct: 68  NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127

Query: 410 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 589
            FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187

Query: 590 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
           P +  GDGPI LVLAPTRELA QIQQ    FG +S +RNTCV
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCV 229


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score =  118 bits (285), Expect = 6e-28
 Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
 Frame = +2

Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 421
           D   ++ + F K+FY     +   SP EV+E R + + + + G++   P+  + +     
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427

Query: 422 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 601
                + ++GY++PT IQAQ  P   SG++++GVA+TGSGKT+A++LP   HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487

Query: 602 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 712
            G+GPIA+++ PTRELA QI +    F     +R  C
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACC 524


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score =  106 bits (254), Expect = 4e-24
 Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
 Frame = +2

Query: 341 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 520
           + ++ +++ G ++ NP++ +EEA  P  + + +K + YKEP+ IQ    P+ +  K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291

Query: 521 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 664
           +A+TGSGKT A+I+P I+ I+  PP+   +   GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 41/91 (45%), Positives = 63/91 (69%)
 Frame = +2

Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 565
           PI  F+E +    +++G+K   YKEPTPIQA  WP  ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222

Query: 566 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 658
           A+ ++N     +    P  LV++PTRELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           F+E    D + +  + +G+K PTPIQ +  P+ ++ ++++G+AQTGSGKT A+ LP I  
Sbjct: 48  FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107

Query: 578 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
           + NN  P        A+VLAPTRELA QI +     G +  VR+  +
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVI 148


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
 Frame = +2

Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 535
           V VSG ++  P+  F       ++ Q +K  GY +PTP+Q    PI  SG++L+  AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216

Query: 536 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 676
           SGKT  ++ P + +  +  P   P+ +  G         P  L+LAPTREL  QI + + 
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276

Query: 677 DFGHTSYVRNTCV 715
            F + S+VR   V
Sbjct: 277 KFCYRSWVRPCAV 289


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
 Frame = +2

Query: 368 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 547
           G+   +  + F + N    +Q+ +    +++PT +Q++  P+A+ GK+LV  A+TGSGKT
Sbjct: 6   GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65

Query: 548 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 670
            AY++P +  +  Q  I     G  AL+L PTRELAQQ+  V
Sbjct: 66  AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/94 (41%), Positives = 55/94 (58%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           F+  N   +++  V   G+K+ TP+QA   P+ +  K+LV  A TGSGKTLAY+LP    
Sbjct: 3   FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62

Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
           +  +     G G  AL++APTRELA QI  V  +
Sbjct: 63  VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 36/106 (33%), Positives = 61/106 (57%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           F+       + + +   G+K PTPIQ +  P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130

Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
           + +           AL+L+P RELA Q  +V  DF   + +R+  +
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAI 173


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 36/92 (39%), Positives = 56/92 (60%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           F+  N    + +G+  +G++ PT IQ +  P+A+ GK++VG A TGSGKT A+I+P +  
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320

Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVA 673
           +  +P  ++      L+L PTRELA Q   VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
 Frame = +2

Query: 326 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 505
           E E+ R    V ++     + I+ F +    + +Q+ +K MG++  T IQ +  P  ++G
Sbjct: 68  ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126

Query: 506 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
           ++++G A+TGSGKTLA+++P I  ++     P R G G   ++++PTRELA QI  VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
 Frame = +2

Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 562
           ++ FEE      + +G+ +M +++P+ IQ +  P+ +S   +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172

Query: 563 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 703
             +  ++   P      P A+ LAP+RELA+QI  V  + G  + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/96 (33%), Positives = 56/96 (58%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           FE+      +  G+   G++ P+PIQ +  PIA+SG++++  A+ G+GKT A+++P++  
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105

Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
           ++ +    +      L+L PTRELA Q  QV    G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
 Frame = +2

Query: 332 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 511
           +E   N E+T S  E  N +  FEE N  + + +G+   GY+ P+ +Q++       G++
Sbjct: 3   DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60

Query: 512 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 688
           ++  AQ+G+GKT  + +  +  I+    +R      AL+L+PTRELA QIQ V    G H
Sbjct: 61  VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115

Query: 689 TSYVRNTCV 715
            +   + C+
Sbjct: 116 MNVQCHACI 124


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 39/118 (33%), Positives = 60/118 (50%)
 Frame = +2

Query: 332 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 511
           EE     E+      +   + +F E       +  +K   +   T IQ Q  P A+ G++
Sbjct: 19  EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78

Query: 512 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
           ++G A+TGSGKTLA+I+P I ++  +      DG  ALV++PTRELA Q  +     G
Sbjct: 79  ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 36/96 (37%), Positives = 49/96 (51%)
 Frame = +2

Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
           F +     ++   +K +   EPT IQ       + G+N +G A+TGSGKT A+ LP I  
Sbjct: 9   FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68

Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
            +  P      G  AL+L PTRELA QI +  A  G
Sbjct: 69  WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
 Frame = +2

Query: 251 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
           D++ L   N  F +  P P++ ++   +++      +  V+G   +NP+   EE  FP+ 
Sbjct: 2   DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEG 55

Query: 425 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 601
           +  + +K     E T IQ    P   S ++L+  A TGSGKT+AY+ P +  +    P  
Sbjct: 56  ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113

Query: 602 RGDGPIALVLAPTRELAQQIQQVA 673
              G  A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = +2

Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 622
           G+ +P PIQ+   P A  G +++G A TGSGKTLA+ +P + H      +R  D     A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195

Query: 623 LVLAPTRELAQQIQQ 667
           LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = +2

Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 568
           I  F++ N    + +G+   G++ P+ IQ +     +  ++++  AQ+G+GKT  + +  
Sbjct: 18  IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77

Query: 569 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 715
           +  I+    +++     AL+LAPTRELAQQIQ+V    G    V  + C+
Sbjct: 78  LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
 Frame = +2

Query: 446 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 613
           M    PT IQ+   P  ++   K+    AQTGSGKTLAY+LP +  +   P     R  G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216

Query: 614 PIALVLAPTRELAQQIQQVA 673
             A+++APTREL QQI  VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
 Frame = +2

Query: 365 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 541
           S ++   P  + E A+     +  +   G+++ TP+Q +    +  + +N V  A+TG+G
Sbjct: 29  STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88

Query: 542 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 703
           KTLA++L A   +    P        +++L+PTRELA QI + A    + + +R
Sbjct: 89  KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
 Frame = +2

Query: 431 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 610
           + +   G++ P+ +Q    P ++ G +++  A++G GKT  ++L  +  I    P+   D
Sbjct: 64  RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117

Query: 611 GPIA-LVLAPTRELAQQIQQVAADF 682
           G ++ LVL  TRELA QI+   A F
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARF 142


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 509  NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 661
            NL+ V  TG GK+L++++PA++    Q P  +    + LVL P   L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 509  NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 661
            NL+ V  TG GK+L++++PA++    Q P  +    + LVL P   L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 488 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 661
           P+   G ++   A TGSGKTL+Y++P +  ++++  P +R       +V+ PTREL  Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 497 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 655
           +SGK++  +  TG GK+L Y LPA++    +    RG   + LV++P   L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = +3

Query: 186 DLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 353
           +L++++ K N +  +  +A +   FH   +   F+ HI +F K+++   ++  I+T
Sbjct: 358 ELKEILNKYNGVHTQE-LAGMRRRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 446 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 586
           + Y+    IQ+  +PIA  + +N++  A TG+GKT   +L  +  I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +2

Query: 356 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 535
           V V  VE   PI Y            GV  +GY +  P    G P+ ++GK +  V    
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308

Query: 536 SGKTLAYILPAIVHINNQPPIRRGD 610
            GK    +L   + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = +1

Query: 505 KEFSWRSSNGFRQNVGLHL------ASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 666
           KE  W     F   +G+ L      A   AHKQ     ER  +    L ++Q  +   S 
Sbjct: 155 KENWWPLKETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214

Query: 667 SCCR 678
           SCC+
Sbjct: 215 SCCK 218


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
 Frame = +1

Query: 532 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 684
           GF  + G  +  HC        H++  AY E      F    Y R++T +   C R W
Sbjct: 33  GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 251 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 394
           D V L PF K     FYDP P  LK + +E+     +  + V    +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 449 PLSLHLVAHNQENL--LLQSIE 390
           PL LH+V+HN+++L   LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,592
Number of Sequences: 5004
Number of extensions: 57534
Number of successful extensions: 191
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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