Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120041.Seq
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   4.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.3  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.7  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   9.9  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 298 FFISN*MPSDRHFELLSSSSKMGKTIFDILKRLMRWLLQINHP 170
           F+  N +P D+     +S  +  K IFD+  +L   +L + HP
Sbjct: 727 FYFDNSLPEDQSLLFPASLKRSAKNIFDLAYQL-NGILPVFHP 768


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 564  LRFFDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 713
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 48  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 161
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 582 TNARTHRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 755
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,896
Number of Sequences: 5004
Number of extensions: 69376
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)