Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120026.Seq
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 31 0.13
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 30 0.39
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 27 2.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.8
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 6.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 8.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 8.4
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 560 LRCRLKTTMSIGRPFFYHLFSVIKNEHKICQFGRVFHQIPHGR 432
++CR+K M ++ +FS + +K+CQFGR+ I HG+
Sbjct: 20 VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.9 bits (64), Expect = 0.39
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +3
Query: 225 LLQQIQ-HGPAIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYT 401
LL ++ HG ++ I++ L + + I ++ +Q+ K K KKK +N + + N+
Sbjct: 82 LLHEVDYHGKSLEILDMLLQSRNSMISSLRSELQE--KNQKDKKKEVNKLEEKMTNAKEP 139
Query: 402 KIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTE--KMVK 515
+ P +S A + TPE + DH E K++K
Sbjct: 140 NVNVPSMKASSA---ISVETPETIESEASVDHKEASKIIK 176
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 267 NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 437
+ L +K N ++ V + + K + +K V+ N IL NS W IK+P S P
Sbjct: 902 SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960
Query: 438 MWDLVKNTPELADFV 482
D N +L +
Sbjct: 961 SMDFTSNDEQLVQLL 975
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/54 (18%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +3
Query: 234 QIQHGPAIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 389
+++ +A++N ++ ++IN++ + + ++ K + K++V+ K +LF+
Sbjct: 435 RLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLRRIKQLLFS 488
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 312 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 404
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 387 NSWYTKIKQPEWPSSPAMW-----DLVKNTPELADFVFIFDHTEKMVKKW 521
+SW +KI P+W + A++ + P LA + + +H+ K KW
Sbjct: 157 DSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHSSKSNAKW 206
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 85 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 252
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 323 LHDRHYVEDIVNVLFF 276
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 130 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLLLL*ISWKK 282
K N++ E + + A C + LL KLE Y +N D L + W K
Sbjct: 2055 KRNILLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLWLK 2105
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 339 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 470
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,463
Number of Sequences: 5004
Number of extensions: 67361
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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