Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120017.Seq
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.30
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 29 0.68
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 1.6
SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8 |Schizosac... 28 1.6
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.1
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 27 3.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.8
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 8.4
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 8.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 8.4
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.30
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 13 ERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSV 186
+RGN + +PPPPL Y P AT NA NNA TT N + ++ ++ +
Sbjct: 55 QRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYANDYSSEL 111
Query: 187 AIAPYNKSKEPTLD 228
A +N + P +D
Sbjct: 112 AYI-HNVNDMPHVD 124
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 29.1 bits (62), Expect = 0.68
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 67 NPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE-PTLDAGESI 243
+P T + + P V DN M T NK LDA ES
Sbjct: 418 DPETNLIAGLAPLKDTPVMVMGVESDNLMPVECQRETARCLEKAGNKQVVYHELDANESF 477
Query: 244 WYNNVWILFKKLLDITGAMTCQNLVLS 324
+ ++ +++++K LD+ G + L LS
Sbjct: 478 YGHDTFLIYRKDLDLVGGKLKKFLELS 504
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 147 QNGHEPQQQHKLGSDRTV-QQEQRTDARRRRIYLVQQCVDFVQKIIR-YYRCNDMSELSP 320
+N +++ G TV ++E ++ RR I V++ V +++ RCN ++ S
Sbjct: 1141 KNNRRLERKRARGKKGTVFEEEYLVNSLRRLIARVEEIRPEVHRLLEALVRCNMTTQASE 1200
Query: 321 LMIHFINTIRDMCIDTNPINVNVVKRFES 407
L +F N I + PI V FE+
Sbjct: 1201 LQRNFANVIGTIGEKVIPILSVPVSTFET 1229
>SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 402 ESEETMIRHLIRLQKELGQGNAAESLPSDSNIFQASLC*IRCRRTRKNFTTVALICWVK 578
E ++ +RHLI L G ++P D Q+ +RC + K VAL +V+
Sbjct: 27 EIDDISLRHLITLALNQSFGIFGSAIPIDFLHRQSKFLYLRCHKEDKKKVLVALGSYVR 85
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 416 HDTPPDSVAKRVGTRQRGRVPAERFEYI-SGIFVLNSLPA 532
+D+ PD++ +RV +QR P + F+ I + V+NS A
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 199
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 243 LVQQCVDFVQKIIRYYRCNDMSELSPLMIHFINT 344
+V +C+ F+ + R ++C D +E L+ F+NT
Sbjct: 508 VVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 46 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 189
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 142 DNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGESIWYNNVW 261
+NK+D N++ I+P +K+ E +D G Y+ W
Sbjct: 67 ENKLDYIEDMGFNAIWISPIDKNIEGDID-GAGYAYHGYW 105
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 132 YDARQQNGHEPQQQHKLGSDRTVQQEQR 215
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 16 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 111
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,380
Number of Sequences: 5004
Number of extensions: 61243
Number of successful extensions: 265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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