Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120016.Seq
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 63 3e-11
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 63 3e-11
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 63 3e-11
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 63 3e-11
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 63 3e-11
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 63 3e-11
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 63 3e-11
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 63 3e-11
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 63 3e-11
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 63 3e-11
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 63 3e-11
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 28 1.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 5.8
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 7.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
Q +++ ++IN AKC F +V F+G IS G P E I + + P+ + LR+F+
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAI 498
G VNY R+F+ ++L PL N +
Sbjct: 647 GSVNYLRKFIPKTSQLTHPLNNLL 670
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 179 YVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y+DDIL++S+ +H H++ + ++LK +L+I Q C
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLK-NANLIINQAKC 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
WTP + K L S ++ H + ++ L TDAS VGA ++
Sbjct: 678 WTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQ 725
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 388 PLPQTVQGLRRFIGMVN--YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSKNAL 561
P+P L ++N Y +LRN+ + PL+N+ V +K ++G LS +
Sbjct: 50 PIPSIFDNLFNLFKVINTTYTFLYLRNSLTITFPLLNSSVKQSLK-KELTIGDLSQLREI 108
Query: 562 MP 567
P
Sbjct: 109 CP 110
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 247 EKSTKVCSMLKSITGIH 197
+K+T VCS+ KSIT +H
Sbjct: 599 KKATSVCSVPKSITDLH 615
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 301 APEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
A V FL A+ PP ER++ + + Q VQ L+ +
Sbjct: 247 ASPVPFLNGNEPANSGLPPIERVEDIDELSKEQCVQYLKGY 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,926
Number of Sequences: 5004
Number of extensions: 51797
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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