Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    84   2e-17
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   4.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.9  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHG 673
           V  KKRRIT +EC ND++SMID+AK ADLVLLL DA+FGFEME  EFLNI   HG
Sbjct: 113 VAGKKRRITFLECPNDLSSMIDVAKIADLVLLLIDANFGFEMETMEFLNILAPHG 167



 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +3

Query: 270 NPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLE-XXXXXXXXXXXXXXGKTTLI 446
           NPKAFA+ +A R  RQ  R  D+  KK H+P VD+TP E               GK+TLI
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDEAPPPVIVAVMGPPGTGKSTLI 91

Query: 447 NNLIKSFIKTNVTNTDGPITM 509
            +L++ + K  ++   GPIT+
Sbjct: 92  KSLVRRYSKYTISQITGPITV 112


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDI 577
           +R +  VTS   RIT++E N + N ++ I
Sbjct: 80  KRDYLVVTSDSGRITILEYNVEKNKLVPI 108


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 413 YDSDHNWRRFQRRLVYLGDVLFFGDNVFTPTELSFSSYSILN 288
           YDSD NW R Q  L    D++ FG      TE+     S++N
Sbjct: 398 YDSDWNWAR-QDALKMFFDII-FGRLKHVDTEIVARCISVMN 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,909
Number of Sequences: 5004
Number of extensions: 46706
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)