Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060085.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   3.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.8  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    26   5.8  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   5.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 257 ANVRMVNGVPRHGAYR--VKVFRQTVARRDLDYGRRIVQVAKHQRIIGKRFHDN*IK 93
           AN  MV   PRHG Y     +FR  V+ +++D   R VQ  K+     +   DN +K
Sbjct: 296 ANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQ-TKNSAYFVEWIPDNVLK 351


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 15  YLGLIEMFKDQFDNINVRNLIANNQTF 95
           YL + E+ K + +++ +RN +A  QTF
Sbjct: 70  YLYISEILKSKAESLRIRNSLATLQTF 96


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 614 FANDLVSMLD-PKLT*IAPLFDLFIFASMTGLNLVNAHFLQDGFLRQDTG 468
           F+N  +  +  P LT I   F +     +T LN  N   +  GF+  DTG
Sbjct: 229 FSNTTLDNISVPYLTEIGQSFAVLYSPELTSLNFPNLTTVGGGFVINDTG 278


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 366 PNCCLSNALDMLAKILNSL-YKRISVIK 286
           P+ C  NA+D+L K+L  +  KRIS I+
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIE 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,221
Number of Sequences: 5004
Number of extensions: 60698
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)