Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    74   7e-15
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    74   7e-15
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   3.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   7.3  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    23   9.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    23   9.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 73.7 bits (173), Expect = 7e-15
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPDLV  VH +++KN RQPY VS++AGHQT AESWGTGR  A
Sbjct: 31  PIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALA 74



 Score = 33.9 bits (74), Expect = 0.007
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRA+ RIPRV GGGTHR
Sbjct: 70  GRALARIPRVGGGGTHR 86


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 73.7 bits (173), Expect = 7e-15
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPDLV  VH +++KN RQPY VS++AGHQT AESWGTGR  A
Sbjct: 31  PIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALA 74



 Score = 33.9 bits (74), Expect = 0.007
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRA+ RIPRV GGGTHR
Sbjct: 70  GRALARIPRVGGGGTHR 86


>SPCPB16A4.05c |||urease accessory protein UREG
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 72 TDGRTYEYHHHGHAEFGRQH 13
          T   T++Y HH H   G  H
Sbjct: 15 THHHTHDYDHHNHDHHGHDH 34


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1008

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 54 EYHHHGHAEFGR 19
          E+HHHGH  F +
Sbjct: 5  EHHHHGHNGFSK 16


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 102 RNVNIIDQVRTDGRTYEYHHHG-HAE 28
           ++V+++ ++ TDG+   +  HG H E
Sbjct: 79  KDVDVVTKILTDGKIIPHREHGKHKE 104


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 156 LVTSLLAHAVGLPRVLGHRNVNIIDQVRTDGRTYEY 49
           L+ SL+ H   +P  L H ++   +      R Y Y
Sbjct: 383 LLGSLVEHRSSVPNHLSHMSITRFEDKTKKSRQYRY 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,930
Number of Sequences: 5004
Number of extensions: 19132
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)