Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    31   0.22 
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    27   2.1  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   4.8  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   8.4  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   8.4  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 92  NVISIEQN*CSLFSRAEFLQPGGSTSSRAA 3
           N +S E   C++ ++AEF  PGGS   RAA
Sbjct: 30  NTLSNETG-CNILAKAEFQNPGGSVKDRAA 58


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 65  CSLFSRAEFLQPGGSTSSRAA 3
           C + ++AEFL PG S   R A
Sbjct: 67  CDILAKAEFLNPGNSPKDRVA 87


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 598 YMVWLNYIHSHGE 636
           Y  +LNY+HSHG+
Sbjct: 75  YFTFLNYLHSHGQ 87


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 204 GPQWINHSILNCHHYHLFTKQITKYIE 284
           G  W++ ++  C H   F K+  KY++
Sbjct: 31  GYVWLHKAVFTCAHELAFNKETDKYLK 57


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 QNKLQNILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYK 396
           +N L   L    +  +++   + + A+E +CG  W  +     IY+
Sbjct: 94  ENALSKYLPYLSKNSNILFVQNGMGAVENVCGKLWPEEQNKPSIYQ 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,986
Number of Sequences: 5004
Number of extensions: 69423
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)