Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    32   0.031
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   4.7  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    24   6.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   6.2  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    24   8.2  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 31.9 bits (69), Expect = 0.031
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 256 SLQPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           +L PF K+FY  H  V  RS     EYR   E+ V
Sbjct: 78  TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVV 112


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 152  EPNYRRICCLLQIWTTVSTAIIPVTGHD*FPDLV 51
            E ++  IC LL IW  +S  +  +   D F D V
Sbjct: 1048 EKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAV 1081


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 278 FLLKGWSEQNPNLGDACSDLQRILFSHQILQI 183
           F  K WS + PN  D  + L  +LF   +L I
Sbjct: 148 FYSKWWSRRIPNFVDRNASLIMVLFQPALLLI 179


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 224 QNMRRPDWDSVHSNLSTKTFMIHILQFSKDH 316
           Q M  P +DS+H+      FM+  L   + H
Sbjct: 171 QTMTEPQYDSMHTQFMWNEFMLRQLIKFRSH 201


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 223 SEHASPRLGFCSLQPFNKNFYDPHPTVLKRSPYGGAE 333
           ++ A  R+G   +Q F + F+D  P  +     G A+
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIAD 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,506
Number of Sequences: 5004
Number of extensions: 21990
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)