Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021027
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    36   0.007
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          30   0.35 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   9.9  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 608 RFRSDAAADRYSTRNGLSVSEHVKXXXRMDISLRLAGRSRGPGTGSMWSASSAGSTPRH 432
           RF  D+ + R S R+G       +   R +  L+   RSR P   S W +SS+G  P H
Sbjct: 21  RFTEDSYSRRDSQRSGNEAPRESRYY-RKEEHLQERSRSRSPARDSRWKSSSSGFAPAH 78


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 347 NERTTHQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRSQAPDSCQRAGD 514
           +E +T +DLT+     T++ H H   E  ++++ +L+++ +   SQ   +   A D
Sbjct: 141 HESSTSKDLTDEASENTIITHSHPESEPLEKIFRKLVEENSEMNSQVSKANIHAPD 196


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 40  DSVSGGARCRSLR*STTGTYLAT 108
           DS+S  + C SL  + TG YLAT
Sbjct: 608 DSISTPSVCTSLTFAPTGDYLAT 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,219
Number of Sequences: 5004
Number of extensions: 44576
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)