Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021023
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    95   6e-21
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    69   4e-13
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    42   1e-04
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   0.95 
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   1.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    26   3.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.7  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 42/73 (57%), Positives = 57/73 (78%)
 Frame = +1

Query: 280 TELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIY 459
           ++    L +K+APPL+TLLS + E+QYVALRNINL++QKRP I   + +VFF KYNDP+Y
Sbjct: 276 SDFTDFLYKKMAPPLLTLLSTDSEIQYVALRNINLILQKRPSIFDVKTRVFFCKYNDPLY 335

Query: 460 VKLEKLDIMIRLA 498
           +K+EKL I+  LA
Sbjct: 336 IKMEKLKIITMLA 348



 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 30/60 (50%), Positives = 46/60 (76%)
 Frame = +2

Query: 74  NKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAHANAAVVLSAVKVLM 253
           ++L+ AL+EC EWG++ IL++L+ +   D +EA  +CER+ P+  HAN+ VVLSAVKV+M
Sbjct: 209 DRLMVALSECNEWGRITILNSLARFRTSDIKEAEYVCERVVPQFQHANSGVVLSAVKVIM 268


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +1

Query: 277 DTELVSTLSRKLAPPLVTLLSAEPEV-QYVALRNINLVVQKRPDILKHEMKVFFVKYNDP 453
           D   V     K  PPLVTLL+ +    QYV LRNI +++++ P++  +++  F+  ++DP
Sbjct: 272 DDNRVKEYFMKTQPPLVTLLARKSSATQYVILRNIQIILEQCPEMFANDIHFFYCNFDDP 331

Query: 454 IYVKLEKLDIMIRLA 498
           IYVKLEKLDI+ ++A
Sbjct: 332 IYVKLEKLDILTKIA 346



 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 33/60 (55%), Positives = 42/60 (70%)
 Frame = +2

Query: 74  NKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAHANAAVVLSAVKVLM 253
           NKL+ +L +C+EW QV ILDAL  Y P+   EA S  ERI+P L H NAAV + AVKV++
Sbjct: 205 NKLVKSLTDCSEWLQVAILDALIFYVPQKPGEAESFAERISPWLQHGNAAVCMGAVKVIL 264



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = +3

Query: 507 HIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVE 614
           ++ Q+L E  EYA+E+DV+ VRK+V+ IG  AIK+E
Sbjct: 350 NLDQILPEFVEYASEIDVELVRKSVKCIGYLAIKIE 385


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%)
 Frame = +1

Query: 310 LAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMI 489
           +  PL+ LL  +P V+   LR I+ +V K P++ K+ +K FF+  +D     L K++I+ 
Sbjct: 297 IVEPLLQLLLEKPIVRTTTLRYISQIVYKTPELFKNHIKSFFLIASDSDDTCLLKINILS 356

Query: 490 RL 495
           RL
Sbjct: 357 RL 358


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 44   PLVEMNA-PTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAHANA 220
            P   MNA P + K  T    CT +  + IL  L N +   +    S+   +T  L   + 
Sbjct: 932  PCFLMNAFPQLEKSTTLQKSCTNFC-ILILQLLLNSTATASNILESLSPLLTSGLKSISK 990

Query: 221  AVVLSAVK 244
             VVL+A+K
Sbjct: 991  EVVLAAIK 998


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 104 TEWGQVFILDALSNYSPRDAREAHSICERITPRL 205
           T W Q F  + +SNY P D    H     + PRL
Sbjct: 201 TRWSQYFADNIVSNYRPGDLILIHDYSLFLLPRL 234


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -1

Query: 455 IGSLYFTKNTFISCLSMSGRFCTTRLMFRSATYCTSGSALSSVTSGG 315
           IGS+Y +++T  S  + +    +TRL++ +A+  T  SA  +   GG
Sbjct: 21  IGSMYASRDTSTSSFT-NPTDSSTRLLYNNASNATFSSAALAAGVGG 66


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 519 PGLCGLGSQSDHYVQFLQFNVDRVIVLHKEHLHLVFE 409
           P +C + +  D    F Q  V++++ L K+H  L+FE
Sbjct: 56  PYVCVIKTHIDVVEDFDQDMVEKLVALGKKHRFLIFE 92


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 286 LVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVK 465
           ++S LSRKL      LL    EV  + +     V++KR  +L ++      + N P  VK
Sbjct: 590 VISCLSRKLVKGSEYLLRTYHEVIRIWISQQEAVIEKRNSVLSNK-SCASSESNTPASVK 648

Query: 466 LEKLDI 483
            +  DI
Sbjct: 649 QDYDDI 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,501
Number of Sequences: 5004
Number of extensions: 37203
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)