Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021012X
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.95 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.8  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.1  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   6.7  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.7  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   6.7  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    25   8.9  

>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 510 HSLPDSSSVSAQLSLLGVTR-FNFIGRSLSTFTLFRDLVFCSSVSGMLDKSCGCLESLFK 334
           HS    +S + ++SL   T+ +  I  SL TFT        +SV  +  K    LE LF 
Sbjct: 192 HSSLIDTSRAHRVSLTNATKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKLFA 251

Query: 333 MYC 325
            YC
Sbjct: 252 DYC 254


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 362 LLSNIPDT-EEQKTKSRKRVKVDKERPMKLKRVTP 463
           LLS+I +T EE+K KS    K DK R ++LK  +P
Sbjct: 58  LLSSIKETMEEKKKKSSSFEKRDKRR-VQLKEKSP 91


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 470 HYSALLVLISLDVLYQPLLFSGIWFFVLPYLE 375
           HYS  L L++L + Y    F  I   ++P+LE
Sbjct: 72  HYSLCLSLVALLLFYTLYPFQSITLPLMPFLE 103


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 368 SNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEESGSE 508
           S    +EE+       V+V K++ +     + S    +E +EE+ SE
Sbjct: 51  SESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESE 97


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 308 LDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSD 472
           +DEG +  I  +  + P++ S+ P T+       KR +  + R   L  V PS D
Sbjct: 114 IDEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR-GRPRLHPLPVVQPSVD 167


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 253 GLDWGWFCFCTFVLCL 206
           GL WGW     F++C+
Sbjct: 94  GLLWGWLIAMVFIICI 109


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 278 HSRCCN-PLRFRLGMVLFLHLCSMPLELELTLFSHLVSGVI 159
           H +  N P   R+ + L   +  +PL+  +T+  HL + VI
Sbjct: 154 HPKLLNLPQVVRMALALVAPVLGLPLDFSITIVLHLTAVVI 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,053
Number of Sequences: 5004
Number of extensions: 31509
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)