Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021010
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   3.1  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    27   3.1  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   4.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   7.2  

>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 96  PITSMG-VTFDVPLKFTSVTLIL*GWKVGVL 7
           P+   G V FD P+ F SVT IL G+  GV+
Sbjct: 276 PLAIAGLVFFDAPITFGSVTAILLGFISGVV 306


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 497 LLHGLLPLEQ-HGEEPIG*ASKERTVEGCPSGVT 399
           LLH ++P E+ HG +P    SK   V G  SG++
Sbjct: 38  LLHEVIPPEEDHGLQPSSDVSKVPEVTGSSSGIS 71


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 119 TQAPGNLSLSQVTSGTSAVLSWTPVAPESLRGHFKGYKIQTWTDAGRTGSRRSLW 283
           T+ P N+   +V     A+ +W P  P          KI    DA  TG + S W
Sbjct: 196 TRVPDNVKSEEV-----AMANWEPAHPLHKSNLVTLSKIMRQADASETGGQNSAW 245


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 440 SKERTVEGCPSGVTKLRVSLAGPLKLP 360
           +K RTV+GC +G ++  V  A P+  P
Sbjct: 44  AKRRTVKGCKNGTSEPNVFKARPIPPP 70


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 502 ASYRLQDLLQQGDRYGRGDSEDRKKEI 582
           A Y L  + +Q DRYG   + +RK E+
Sbjct: 753 AMYELAKIYEQPDRYGVSATPERKFEL 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,253
Number of Sequences: 5004
Number of extensions: 35375
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)