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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0034
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    67   3e-12
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    56   4e-09
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    52   8e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    51   1e-07
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    51   1e-07
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    43   4e-05
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    41   1e-04
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.84 
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    27   1.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   3.4  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    26   4.5  

>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
 Frame = +1

Query: 4   PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
           PT+L   T   K+ ++E F PI  +   ++   A++  N  E  L   VF     + + F
Sbjct: 358 PTLLVDATNEMKIAQEECFAPIALVFRAKSPEHALEIANGTEFGLGASVFGRDKQLCQYF 417

Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKSCLKKNFAAIG 363
           T+   +G +++ND   FY ++ +PFGG   SG G + G + +    + K+     F+AI 
Sbjct: 418 TDNLETGMVAVNDFGAFYLLQ-MPFGGCKKSGYGRFAGYEGLRGICNSKAIAYDRFSAIH 476

Query: 364 EKLASG-RYP-PYTEGNLKFITALMKKRHGPSLKYLPH 471
             +     YP P ++   +F+  LM   +G  +  +P+
Sbjct: 477 TGIPPAVDYPIPDSQKAWQFVRGLMGTVYGAWISLVPN 514


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 34/111 (30%), Positives = 55/111 (49%)
 Frame = +1

Query: 1   EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
           EPTIL+ VT    V ++EIFGP+L ++  +   EAI+  N   + L   V +N       
Sbjct: 384 EPTILSNVTEDMAVGKEEIFGPVLAVIKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIK 443

Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
            +    +G++ +N   + +    +PFGG   SGIG   G   +  +T  K+
Sbjct: 444 VSNALEAGTVWVNCYNLLH--HQIPFGGYKESGIGRELGSYGLTNYTQTKA 492


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 30/106 (28%), Positives = 50/106 (47%)
 Frame = +1

Query: 1   EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
           EPT+L+ VT    V  +E FGP+  +   ++  E I++ N+ +  L  YVF+N  +    
Sbjct: 379 EPTVLSGVTQDMLVASEETFGPLASVFKFDDTEEVIEWANDSDVGLAGYVFTNNLSTMIH 438

Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTF 318
             ++   G +  N  I       + FGG+  SG G   G+  +  F
Sbjct: 439 VAKELEVGLVGAN--IEMVDEPFISFGGIKQSGFGKEAGRLGVQEF 482


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
 Frame = +1

Query: 4   PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
           PT+   V   +K+  +EIFGP+L +       EA++  N+ E+ L   VFS      + F
Sbjct: 387 PTVFTNVQTHNKIWREEIFGPVLAVKTFHTNEEALELANDSEYGLGSGVFSTNPKTLEFF 446

Query: 184 TEQTRSGSISINDTIMFYGVET--LPFGGVGNSGIG 285
           +    +G  S+N+    Y V T  LP+ G  +SG+G
Sbjct: 447 SNNIEAGMCSLNN----YHVVTHELPWIGWKHSGLG 478


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 32/110 (29%), Positives = 54/110 (49%)
 Frame = +1

Query: 4   PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
           PTI A  +    ++++EIFGP++ I   +   EAI+  N   + L    F+         
Sbjct: 380 PTIFADCSENMTIVKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRV 439

Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
           +++  +G + IN T     ++  PFGG+  SGIG   G   I+ +T  K+
Sbjct: 440 SDELEAGMVFINST-ENSDIQA-PFGGIKMSGIGNELGSNGIEMYTQIKA 487


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 29/111 (26%), Positives = 47/111 (42%)
 Frame = +1

Query: 1   EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
           EPT++        + E+E FGP+  +   +   E + + N+    L  Y+FS   +    
Sbjct: 384 EPTVIINAKQGMLISEEETFGPVGALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFR 443

Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
             E  + G +  N  ++   +   PFGGV  SG G    K  I  +   KS
Sbjct: 444 VGEALQVGMVGCNTGLVSDVLS--PFGGVKESGFGREGSKYGISEYLDIKS 492


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
 Frame = +1

Query: 1   EPTILAKVTPADKVMEDEIFGPILPIVCIE-NAYEAIKFINEREHP--LVLYVFSNQYNI 171
           EPT+L    P   +  +E+FGP+L +   E +  +A+  + +   P  L   +F+    +
Sbjct: 415 EPTVLLSKNPKHDIFVNELFGPVLSVYVYEDDNLDAVCDLIDTTTPYGLTGSIFAQDRVV 474

Query: 172 QKLFTEQTR--SGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTI-DTFTHKKSCLK 342
            +  T++ R  +G+  IND      V   PFGG   SG     G   I   F   +S +K
Sbjct: 475 VRKLTDRLRNAAGNFYINDKCTGAVVGEQPFGGARASGTNDKAGSGMILSRFVSPRS-IK 533

Query: 343 KNFA 354
             FA
Sbjct: 534 DTFA 537


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 298  KKTIDTFTHKK---SCLKKNFAAIGEKLAS 378
            KKT+DTF  +K   SCLK N   I +K+ S
Sbjct: 1369 KKTLDTFLMEKLCSSCLKNNIEIIPDKINS 1398


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   AHNIGQGHAGRQSDGRRDIRSHLTNSLY 86
           AH+I +   G+  + +  + SHLTN LY
Sbjct: 61  AHSISKPFDGQNDEEKPSLYSHLTNELY 88


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 382 RYPPYTEGNLKFITALMKKRHGPSLKYLPHFMAFALGAAISYGIFAWQKMASDDS*KHEA 561
           R+     GN++ I +  +     S  YL   + F+   A  +G+  W +  SDD   +E 
Sbjct: 484 RFQSTVLGNMEDIQSQTEFFSKTSPLYLTMDVGFSTIEAFLHGVTRWNENTSDDPATYEI 543

Query: 562 MTRRATLSWHNQLFYI 609
           + +   L W  QL  I
Sbjct: 544 ILQNLFL-WCKQLVEI 558


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 298 KKTIDTFTHKKSCLKKNFAAIGEKLASGRYPPYTEGNL 411
           K      TH+KS + +      EK+++ +  PY  GN+
Sbjct: 54  KSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNV 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,381
Number of Sequences: 5004
Number of extensions: 60213
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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