Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0033
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.47 
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   4.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 ACKPGILHRSLGIVCSERIIYFNLQKPWSYEILYPF 400
           A   G+L+     VC + + YFN+ +P  +  ++PF
Sbjct: 505 AASRGLLNSVTSPVCYQILTYFNMYRPLCFASIFPF 540


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 382 RDFISILHKGTGCLLQSQFRFTKKIL 459
           ++F+ IL K    L +S+FR TKK+L
Sbjct: 614 QEFLKILRKHKNQLNKSEFRGTKKLL 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,488
Number of Sequences: 5004
Number of extensions: 55320
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)