Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0021
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    32   0.091
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.0  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   4.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.9  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   7.9  

>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 425 VFRASPRQSDVMIVAGTLTNKMAPALRK 508
           VFRA+P Q  VM+ + TL+N++ P  +K
Sbjct: 222 VFRATPPQKQVMMFSATLSNEIRPICKK 249


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 507 KCTTKCLILDGLFQWVVVLMEVAITTIHTLS*EDAIVLYQLTYMYP-DVHLQLKLYYMVY 683
           K T  CLIL  LF W++VL+  A +     + +  +  Y+L+ +Y   + +  +  ++VY
Sbjct: 87  KTTVVCLILFLLF-WIIVLISCADSKALPKNADSILKAYRLSVLYVWAIDIVFETIFIVY 145


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 299 LDDLLNWGRKGSLWPMTFGLACC 367
           LD    W  KG+ W ++ G+ CC
Sbjct: 112 LDKSQQWFGKGNAWRVSHGVYCC 134


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 167 KKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAVAR 298
           KKG +  + S ++    P P P    P+  FQ+ S   + A+ +
Sbjct: 679 KKGEYHMIYSALQSERFPGPTPFS--PFRSFQELSPSEQAAMVQ 720


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 428 ILRHIGPYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSL 279
           +++ +   +SE  Q    +  +  + R     N S  +S++H V+P PS+
Sbjct: 125 LVKTLNSLNSEFLQLLRKIAINVKEGRQLTTENSSDTSSMTHPVQPSPSV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,866
Number of Sequences: 5004
Number of extensions: 64032
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)