Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0013
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.004
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   1.9  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.7  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.7  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   7.7  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 169 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 261
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 199 RAKNQKKQVEMQKKKNASEKTGLSLQ 276
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 175 ESF*LDNFTKEKFTFVATYNYFKNTVK 95
           ESF  D+F   K+T V  Y  +++ VK
Sbjct: 90  ESFVGDDFVMPKYTLVLPYRVYRDHVK 116


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 154 FTKEKFTFVATYNYFKNTVKAGRYASPV 71
           F  +KF  VA Y + +N VKA  Y   V
Sbjct: 854 FDGQKFIVVARYLFGENIVKAALYEGTV 881


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 160 DNFTKEKFTFVATYNYFKNTV 98
           D F+KE+F+ V  + Y KN+V
Sbjct: 748 DKFSKEEFSSVLPHAYNKNSV 768


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 193 LARAKNQKKQVEMQKKKNASEKTGLSLQERK 285
           +AR + +KK   ++ K    E+  LSLQE K
Sbjct: 316 IARGRIEKKFTNVRGKNRIEEQLTLSLQEGK 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,252
Number of Sequences: 5004
Number of extensions: 25048
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)