Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0005
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   182   4e-47
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.3  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    28   1.3  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.3  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   1.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.0  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.0  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   9.3  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   9.3  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  182 bits (443), Expect = 4e-47
 Identities = 84/162 (51%), Positives = 115/162 (70%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GVRSG++ AK KQ+  DPSY  ++VR  G+++R IC+L+HPI NT +  S QIIIPQ QV
Sbjct: 267 GVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQV 326

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
           +R  DIY++ +S  H V  KG+++A++ST VET +P SEI PGL LLG + + F  V + 
Sbjct: 327 KRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEI 386

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEE 488
           YEP+ DG++ Q +IS+S DAT+HFET   DV  IYK  TG +
Sbjct: 387 YEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTGTD 428


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 518 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 357
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 518 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 357
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 58  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 108


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 518 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 357
           K  +   +IKFF + +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 518 KFQLDFREIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 357
           K  +   +IKFF   +F  F     SC+    G I  R+K L    +I W I++
Sbjct: 38  KINIKTDKIKFFLDNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 PISNTKDALS-TQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESE 299
           P S T  A S ++  + QK     S++    +SYT    A        STT E N P SE
Sbjct: 254 PSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIPESTTREDNQPFSE 313

Query: 300 IR 305
           IR
Sbjct: 314 IR 315


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 105 ICLLDHPISNTKDA-LSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVET 281
           +C LDH + N  +A L     I      +  D Y +     HQ+  +  + AM  +    
Sbjct: 122 VCTLDHDVQNKSEANLRKYKNIESFAKGQGIDFYPAGRGIGHQIMVEQGY-AMPGSMAVA 180

Query: 282 NDPESEIRPGLALLG 326
           +D  S    G+  LG
Sbjct: 181 SDSHSNTYGGVGCLG 195


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 569 YTACYSTVYLRK-NLNELLLYNTSYL 643
           Y  CY+TVY +K  +N+ LL  T  L
Sbjct: 72  YVMCYNTVYHQKTKINDKLLSETEQL 97


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 LDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYT 224
           LD P +N+   L   +  P+K+++ + D +VS +  T
Sbjct: 7   LDEPSTNSTHFLQCLVTEPRKELQGSRDTHVSYLIIT 43


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 285 DPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDAT 425
           +PES +       G ++  FV   D  E +     S +FIS S D T
Sbjct: 174 EPESMLDAEKKSSGILQTLFVGHKDIVERVRSLESSSVFISASADNT 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,564
Number of Sequences: 5004
Number of extensions: 56079
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)