Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B04
(960 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 23 7.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 858 PPXGEXXGAXPXXPPPXPXXPPXXGXGGS 944
PP G PPP P PP GGS
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 847 PPXLPPXGRXXXPPXXXPPPPRXXPPXXXXGGPPPQ 954
PP PP PP PPPP P PQ
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 846 PXXSPPXGEXXGAXPXXPPPXPXXPPXXGXGGSPPP 953
P PP G PPP P P G G PPP
Sbjct: 748 PIPVPPPAPIMGG----PPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +3
Query: 855 SPPXGEXXGAXPXXPP-PXPXXPPXXGXGGSPPP 953
SPP P P P P PP GG PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 859 PPXGRXXXPPXXXPPPPRXXPPXXXXGGPPP 951
PP P P P PP GGPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 846 PXXSPPXGEXXGAXPXXPPPXPXXPPXXGXGGSPP 950
P PP + A P P P PP G+PP
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 944 GPPXXXXGGXXRGGGGXXXGGXXXLPXGGRXGGXSFXXXGXXXXGKR 804
GP G RGG G GG GG GG G G R
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Frame = +1
Query: 883 PPXXXPPPPRXXP-PXXXXGGPPP 951
PP PPPP P P PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 610 PXPPKRXPXXXFSPXAPPPP 669
P PP P P APPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Frame = +1
Query: 850 PXLPPXG---RXXXPPXXXPPP-PRXXPPXXXXGGPP 948
P LPP G R PP PP P PP PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 886 PXXXPPPPRXXPPXXXXGGPPP 951
P PPPP PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 958 PXGGGDPPXPXXGGXXGXGGGXXGXAPXXSPXGG 857
P G G P GG G GGG G GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 734 GGGGGAXPXXGGGGXIFXXXXRGGGGAXGEK 642
GG GGA GG G GG G K
Sbjct: 38 GGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Score = 21.8 bits (44), Expect(2) = 7.1
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -2
Query: 920 GXXRGGGGXXXGGXXXLPXGGRXG 849
G GG G GG GGR G
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGG 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,773
Number of Sequences: 5004
Number of extensions: 14778
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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