Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A02
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.9  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   6.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +1

Query: 322 PINXGGPCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPP-----TGVXPXP 474
           PI  G   S  P P    PPPRS      P  P   S    PPP     TG  P P
Sbjct: 326 PIGNGSSNSSLPPP---PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +1

Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXPX*KXPXGGXS 504
           P    P+P    PP +   P   P S      A  P P  V P P  + P    S
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTS 215



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 340 PCSXNPLPF*XXPPPRSPXPAXXPFSPXXXSXAXFPPPTGVXPXP 474
           P S  P+P    P P S  P   P +P     +    P+ V P P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 302 WRK-YXTEXXVQGRKFRNRVLXNVFFLGSXGRNPXFFFQKANQAE 171
           W+K Y  E   +GRKF  ++  NVF     GR+  F+ Q+   AE
Sbjct: 448 WKKEYWKELLEEGRKFERQLCRNVF-----GRS-SFYVQQKTAAE 486


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 340  PCSXNPLPF*XXPPPRSPXPAXXPFS--PXXXSXAXFPP---PTGVXPXP 474
            P S  P+P      P +P P   P S  P   + +  PP   P+G+ P P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,561
Number of Sequences: 5004
Number of extensions: 21978
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)