SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A15
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    34   0.021
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    31   0.15 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.20 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    31   0.20 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    31   0.26 
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    30   0.45 
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    30   0.45 
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    29   0.60 
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    28   1.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   1.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    27   2.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   2.4  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    27   3.2  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   3.2  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   4.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   5.6  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   7.4  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    22   9.6  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   9.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.8  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   9.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +3

Query: 6   EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEE 185
           E+ ++    ++ ++   +E  + EE+  +  +KK V     +++S  E S E+E   SEE
Sbjct: 40  EESSEEESASSSESESSEEESESEESEVEVPKKKAVAASE-DSESDSESSEEEEETESEE 98

Query: 186 NNPSEDGSETNGHIEEE 236
           ++   D SE+    E E
Sbjct: 99  DSEVSDESESESESESE 115


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
 Frame = +3

Query: 3   LEKKTKRGRKAAGDTNGQDENGKIEETAPKKG----RKKNVEEPPVENKSTDEPSVEDEV 170
           L  KT+    +A D  G    G  E+   K+      +   E P  E K   E    +E 
Sbjct: 63  LSLKTQEPIVSADDAKGAQGKGADEKEEKKETIQPPEEVKTEPPQPEEKEGKEAKEPEEP 122

Query: 171 AVSEENNPSEDGSETNGHIEEEQV 242
              E   P E G E     EEE++
Sbjct: 123 PKEEAEEPQEGGEEEEEEEEEEEI 146


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 6   EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAV-SE 182
           +KK+K+  +++ ++  +  + + E ++ +     +  E      S+ E   E+EV V +E
Sbjct: 74  QKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSES--EEEVIVKTE 131

Query: 183 ENNPSEDGSETNGHIEEEQ 239
           E   S   S ++   EEE+
Sbjct: 132 EKKESSSESSSSSESEEEE 150



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 6   EKKTKRGRKAAGDTNGQDENGKIEETAPKK-GRKKNVEEPPVENKSTDEPSVEDEVAVSE 182
           E  +      +  +  ++E   +E+T  KK G  ++  +    + S+ E    D  + SE
Sbjct: 169 ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSE 228

Query: 183 ENNPSEDGSETNGHIEEEQVPS 248
             + SED  +       E+ P+
Sbjct: 229 SESSSEDEKKRKAEPASEERPA 250


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = +3

Query: 6   EKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEE 185
           E+KTKR R       G+      E    KK +K  V+E  +E    D+ S   E  V EE
Sbjct: 111 ERKTKRPRARRAANEGEHN----ESVPAKKVKKNTVKEEEIEK---DDESATTETPVKEE 163

Query: 186 NNPSEDGSETNGHIEEEQVPSG 251
             P+ + +E + H E+  V  G
Sbjct: 164 --PTGEETEAD-HEEKASVDHG 182


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 18  KRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEP-SVEDEVAVSEENNP 194
           KR  +A  +  G DE+ + EE  PK  R+ N       ++  DEP  V +  A+ +E + 
Sbjct: 45  KRIHQAFQEDEG-DEDWEEEEHKPKAKRRYNTRSNESFSEGDDEPFEVSESSALEDELSD 103

Query: 195 SED 203
           SED
Sbjct: 104 SED 106


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 141 TDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPSGRGR 260
           T+E S EDE    EE+   ED  +  G  E+++ PS + +
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSK 241


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 30  KAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVED-EVAVSEENNPSED 203
           K   +  GQ+ N + EE+  KK RKK V+E  +     D+ +VE+ E  +++ +N   D
Sbjct: 118 KGDKEARGQNSNDQPEESDDKKKRKKKVKE--IRATRLDDKTVEEYEFILAQIDNYDGD 174


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 6   EKKTKRGRKAAGDTNGQDENGKIEETAPK--KGRKKNVEEPPVENKSTDEPSVEDEVAVS 179
           ++ + + RK   D + +D N KIE+   K  K   K+ EE       + +P+   E + +
Sbjct: 156 KEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFNENGPPSGQPNGHIE-SDN 214

Query: 180 EENNPSEDGSETNGHIEEEQVPS 248
           E  +PS+  S  +  I+  + PS
Sbjct: 215 ESKSPSQKESNESEDIQIAETPS 237


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 48  NGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHI 227
           N Q+++GK+  ++      K+V       K  +EPS ++ + V +E N   D   +N   
Sbjct: 247 NSQEDDGKLSCSS------KDVTSSGFSMKGLNEPS-QERLPVEKEQNDKSDEEGSNNEQ 299

Query: 228 EEEQ 239
           EE+Q
Sbjct: 300 EEKQ 303


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   LEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEV-AVS 179
           +EK       +AG    +    K+E   P+       +E   E K + EP V+    + S
Sbjct: 402 VEKAVSATVPSAGAQVQKHNEEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSAS 461

Query: 180 EENNPSEDGSETNGHIEEEQV 242
           +   PS+   E N H +EE V
Sbjct: 462 KVEEPSKKRDEDN-HQKEETV 481


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 57  DENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENN-PSEDGSE 212
           +E+  +E T P   +   VE    + K +  P+VE ++ V+EENN P  +G E
Sbjct: 388 EEHSNLEST-PAAQQTSEVEANNHQEKPSSLPAVE-QINVNEENNTPETEGLE 438


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +3

Query: 30  KAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGS 209
           K+ G+ + Q+E+   +  + +     +  EP  E +  DEPS +D     +EN   E+  
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKD-----DENKDVEEEQ 409

Query: 210 ETNGHIEEEQV 242
           E     EEEQ+
Sbjct: 410 EQEQ--EEEQI 418


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +3

Query: 3    LEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSE 182
            LE + K   ++A + N  D   K ++   K    K+ +E   E + +D+  ++DE+    
Sbjct: 4013 LETEQKSNEQSAAN-NESDLVSKEDDN--KALEDKDRQEKEDEEEMSDDVGIDDEIQPDI 4069

Query: 183  ENNPSEDGSETNGHIE 230
            + N S+   E   H++
Sbjct: 4070 QENNSQPPPENEDHLD 4085



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
 Frame = +3

Query: 42   DTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVA---------------- 173
            D    DEN K E  A K    ++ E+P  EN + DE   +D+ +                
Sbjct: 4109 DMEAADEN-KEEADAEKDEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4167

Query: 174  -VSEENNPSEDGSETNGHIEEEQVP 245
             V E    +EDG +++  +E+ +VP
Sbjct: 4168 NVQENEESTEDGVKSDEELEQGEVP 4192


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/75 (24%), Positives = 30/75 (40%)
 Frame = +3

Query: 18  KRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPS 197
           K   ++   T G+D             RK   ++ P+EN    EP +  E  +SE+    
Sbjct: 177 KTDTRSTEKTKGKDIFSNARNQKGNSSRKN--KKAPLENHKEKEPLLPKEEKLSEQAKRE 234

Query: 198 EDGSETNGHIEEEQV 242
            D  +    +E+E V
Sbjct: 235 RDDLKNIMQLEDESV 249


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 EPSVEDEVAVSEENNPSEDGSETNGHIEEEQ 239
           E + EDE+  SEE     DG + NG  EEEQ
Sbjct: 36  EDAYEDEIE-SEEEYIEADGEKDNGMDEEEQ 65


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 RWKINLLMNPQLKMKWQCLRKIIL 195
           RWKI     P L  +W+C R ++L
Sbjct: 78  RWKIQPKKVPTLAEQWECTRLVLL 101


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = +3

Query: 45  TNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGH 224
           T+ +DE+   E       +KK   +   +N  +     E++ + ++ +    D  E  G 
Sbjct: 74  THNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKNDEFELGGE 133

Query: 225 IEEEQVP 245
             E+++P
Sbjct: 134 ENEDEMP 140


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 119 FLYILLPSFFWCCFLYFTILILSICVTGSF 30
           F  + LP FFW   +Y+T+ I  +   G +
Sbjct: 80  FFMLALPIFFWSGCIYYTLDITQLFAAGVY 109


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 543 KKKETKSRKNQGKKVAAKEETDDAVREDEPXS 638
           K K+ K  + +    A+KEE ++ VREDE  S
Sbjct: 528 KNKKGKHTQIEDPTAASKEELENLVREDENDS 559


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 15  TKRGRKAAGDTNGQDENGKIEETAPK 92
           +K   K+ GDT+  D N K E TA K
Sbjct: 886 SKSKEKSGGDTSALDSNAKNEPTAAK 911


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 36  AGDTNGQDENGKIEETAPKKGRKKNV 113
           AG +   + +G IE+ APK+ +K+N+
Sbjct: 203 AGTSKPVNNHGSIEQDAPKQTKKRNL 228


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +3

Query: 45  TNGQDENGKIEETAPKKGRKKNV-------EEPPVENKSTDEPSVEDEVAVSEENNPSED 203
           TN  +    I+   PKK  KKN        E+P  ++   D  S + E    + +N SE+
Sbjct: 196 TNESEITPNIKVLPPKK--KKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEE 253

Query: 204 GSETN 218
             +TN
Sbjct: 254 NKDTN 258


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 122 RFLYILLPSFFWCCFLYFTI 63
           R +YILL +  WC FL+  I
Sbjct: 222 RAVYILLLALGWCLFLFIAI 241


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 21.8 bits (44), Expect(2) = 9.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 69  KIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSE 212
           +I E    +GR +  E   +E  + +E   E+E A S+   P     E
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEE 371



 Score = 21.8 bits (44), Expect(2) = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 291 PEPRTGRGRKPKQEIEDEV 347
           PEP T    K  +E+ DE+
Sbjct: 363 PEPETSEEEKEDKELADEL 381


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = +3

Query: 111 VEEPPVENKSTDE-----PSVED--EVAVSEENNPSEDGSETNGHIEEEQVPSGRGRXXX 269
           V+E   E + +DE     P+ ED  E    +E +  E  SE N   EE+++ S   +   
Sbjct: 123 VDEEDEEEEESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKKAQ 182

Query: 270 XXXXXXXPEPRTGRGRKPKQ 329
                   E        PK+
Sbjct: 183 VKKKRTKDESEQEEAASPKK 202


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 STDEPSVEDEVAVSEENNPSEDGSETN 218
           S  +P+ +  +    EN+ S DGSETN
Sbjct: 631 SETQPAPKQNINEEFENSTSTDGSETN 657


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 183 ENNPSEDGSETNGHIEEE 236
           EN+ SEDGSE+ G  +EE
Sbjct: 335 ENSDSEDGSESIGSEDEE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,905
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 225
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -