Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A05
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   1.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    28   1.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   4.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   7.6  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 631 PEESVFRECLLERCSVEENKIISGLETSXENMR 729
           P ES F E +L  C+V + K++S L T  ++ R
Sbjct: 232 PSESEFSERMLAFCAVHQRKLLSMLGTMLQSSR 264


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 126 PPASSFWSTNITVIHFN-N*STAAVLQCSFRYNSTS 22
           P A S  S N+T +H +   ST    +CS  YNSTS
Sbjct: 631 PKAISNSSDNMTQLHLDLANSTVTCSECSMEYNSTS 666


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
 Frame = +1

Query: 358 LDDMSYSLE--EAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYT 531
           LD +S  LE    EN D+   +  L+  + +   DP   ++L   L+DS    L   +  
Sbjct: 144 LDCVSTFLELMNHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIK 203

Query: 532 RPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQ--PEESVFRECLLERCSVEENKIISGL 705
           R   ++      G          L S+ +S+     E +   E LL R SV+E  I + L
Sbjct: 204 R-FDESNEEDRHGVYCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVDETSISTNL 262

Query: 706 ETSXE 720
           + + E
Sbjct: 263 QYAVE 267


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 352  YNLDDMSYSLEEAENMDLRENI 417
            Y++ D SYS+ E  + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 226 KEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMS 372
           K  +PA+Y+S A    N +   +   + S+ G  ++ + + P NL   S
Sbjct: 422 KSIFPASYSSSAEDGQNMQAPAHAYMQSSIYGVNQEQKSEYPSNLSMQS 470


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/83 (21%), Positives = 32/83 (38%)
 Frame = +1

Query: 442 EITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDS 621
           E+ F P        P++   A + +   Y RPL   I+ +   + +  Y+   L  + D 
Sbjct: 388 EVEFHPLSICKKLQPIIKRLAESNDTAQYIRPLQQVILTRLFQQLSQVYDSISLKYVMDL 447

Query: 622 VAQPEESVFRECLLERCSVEENK 690
               E   F    +E+  +  NK
Sbjct: 448 ATFEEPYDFNPGQIEKFIMNGNK 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,745
Number of Sequences: 5004
Number of extensions: 72016
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)