Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40023
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164...    29   3.4  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    28   7.8  

>10_01_0136 -
           1639780-1639901,1640038-1640093,1641958-1642061,
           1642119-1642301,1642963-1643073,1643175-1643330,
           1644627-1644866,1646496-1646603,1646764-1647903
          Length = 739

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 786 GGRKTKILKDQFYHPKAFPGLIYQGKNYKLNNSFHFSLHLIQNCIRIEYEKSLRXTNHWK 607
           G RK  I     + PK F  +     ++ L+ +F+  +  +QN  R+E    +   +HWK
Sbjct: 493 GRRKLTIQNSLQWCPKFFNLVSLTLGHWCLHGNFYTLIVFLQNSPRLEKLTLILGNDHWK 552

Query: 606 TY 601
           T+
Sbjct: 553 TF 554


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 786 GGRKTKILKDQFYHPKAFPGLIYQGKNYKLNNSFHFSLHLIQNCIRIEYEKSL 628
           G RK K+L +     KA     ++GKN K   +      L QN I+ + +KSL
Sbjct: 121 GFRKQKVLVEIGVRKKALHSEKFKGKNSKTKVTSASMSQLFQNAIQKQKKKSL 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,631
Number of Sequences: 37544
Number of extensions: 325875
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)