Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40016
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 33 0.25
12_01_0843 + 7891622-7892524 31 1.0
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 31 1.0
06_01_1013 - 7931756-7935109 31 1.3
01_05_0534 + 22999876-23000333,23000835-23000949 30 1.8
12_02_0459 + 19267426-19267792,19268691-19268779 30 2.3
12_02_0674 - 21745321-21746223,21746229-21747608 29 5.4
06_03_1363 - 29576265-29577575 28 7.2
06_02_0262 + 13563082-13563633 28 7.2
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407... 28 7.2
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 28 7.2
01_03_0113 - 12647599-12648052,12648078-12648319 28 7.2
10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111 28 9.5
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843... 28 9.5
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 9.5
08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597 28 9.5
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 9.5
06_03_0857 + 25443251-25444429 28 9.5
06_01_0413 + 2946703-2947073,2947174-2947183 28 9.5
05_06_0243 - 26639497-26641173 28 9.5
03_05_0505 + 24991699-24991921,24992100-24992665 28 9.5
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 410 PRIGPDGAGESYRTRRFFEFNGIRSTILRGCHFDEFSFSMFYSQPHYSDLIFSDVAVRLK 589
P GA +R+RR E S+++ GC++ S S +++ Y D+ F+DVA K
Sbjct: 106 PASAEGGAPRKWRSRR--EVVDWLSSLVSGCNYGSSSMSNRFNENPYDDIEFTDVAAS-K 162
Query: 590 PLPHNT 607
+ H +
Sbjct: 163 DVSHTS 168
>12_01_0843 + 7891622-7892524
Length = 300
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 346 DCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*P 206
DC+ + + S P+ +S+GM + PPPS M P P
Sbjct: 84 DCKEMEREKEKEKSLSSPSSSSSGMTSVESSPPPPPSAMLPLLPVRP 130
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +1
Query: 295 DDAASSGRATSCPTTCNLYVHTAPAPKCNCTDTXTSARSQDRS*WGGRIIQNSTL 459
D S+ R CP P C CT + S DR WG R+ +TL
Sbjct: 305 DQPLSTPRTERCPNCSG--AGKVMCPTCLCTGMAMANNSIDRRAWGSRLTNRATL 357
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 280 QRCPPDDAASSGRATSCPTTCNLYVHTAPAPKC 378
++ P A AT CP C L H P P C
Sbjct: 252 EKADPAVKADDAAATRCPHVCVLQCHPGPCPPC 284
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 361 PCGHRDCRSSG---KRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*P 206
P HR CRSS + S+A+ + RRPA +T S PP+ P P
Sbjct: 24 PPRHRACRSSFAVIRSSKAEGAPRRPAAPPLSPPPKTPTLSTPPTLSQPPTPVKP 78
>12_02_0459 + 19267426-19267792,19268691-19268779
Length = 151
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 313 QNSRRRPADTSAGMVWRTKATSPPP 239
+ SRRR A T G W A SPPP
Sbjct: 19 RRSRRRRAATGGGGQWAAAAVSPPP 43
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 301 AASSGRATSCPTTCNLYVHTAPAPKCNCTDTXTSARSQDRS 423
++S+ + S P+TC L T P CT ++A + S
Sbjct: 550 SSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSS 590
>06_03_1363 - 29576265-29577575
Length = 436
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 216 GAVRCMVE-GGGDVAFVRHTXPAEVSAGRRREFWARDLLPDDLQSLCPHGTRAKMQLY 386
G C+V GGG V V T P RRE WA P + + G + + L+
Sbjct: 370 GGKACVVAPGGGKVLIVDVTPPPPPPPAARRESWAAPPPPPRMWEVAAPGGKRVVSLH 427
>06_02_0262 + 13563082-13563633
Length = 183
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 238 RGAGTWPSSATPXPQRCPPDDAASSGRATSCP 333
R G WP SA+ PP AA S A CP
Sbjct: 129 RRGGVWPLSASAAGCLPPPPMAAWSATAAGCP 160
>02_01_0552 +
4074001-4074341,4075118-4075257,4075647-4075838,
4077211-4077518
Length = 326
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 69 WTKSCAPGALSSEYVDSGSLPYDNLXHLSHGASFRRCRRDASEQYFGHVGAVRCMVEGGG 248
W + PG+ S E + + +H R+ +R +E+ G G VRC VEG G
Sbjct: 21 WADAAVPGSSSGEVSAAAAAA------AAHPGRRRKEKRGRAEEGGGGGGEVRCQVEGCG 74
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 205 SVTWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATS-CPTTCNLYVHTA 363
S +R G WWR P P P D+ SGR T+ C C V +A
Sbjct: 644 STAVSRAGDWWRRRRDSPGQRVPQ----PADEVRDSGRRTAHCCFICRAGVLSA 693
>01_03_0113 - 12647599-12648052,12648078-12648319
Length = 231
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Frame = +1
Query: 223 CGAWWRGAGTW--PSSATPXPQRCPPDDAA-----SSGRATSCPTTCNL---YVHTAPAP 372
C A W A T P+S+ P P PP A+ ++ R+ +CP L + + AP
Sbjct: 27 CRAAWASAATAMAPASSPPPPPASPPSAASPPATSTASRSRTCPPPLALRRSQLRGSAAP 86
Query: 373 KCNC 384
NC
Sbjct: 87 VVNC 90
>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
Length = 829
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 235 WRGAGTWPSSATPXPQRCPPD-DAASSGRATSCPTTCNLYVHTAPAPKCN 381
WR +PS+A + + DAA+ GR T P + AP CN
Sbjct: 33 WRPLSYYPSAAAAAAEVTESEEDAAAVGRDTRAPPSIGGIARGAPRVGCN 82
>10_05_0034 +
8431753-8431790,8431940-8432063,8432726-8433038,
8433189-8433251,8433778-8434058
Length = 272
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 421 TDPGTLPRLXCLYNCILARVPCGHRDCRSSGKRSRAQNSRRRPADTSAG 275
+ P TL L + +P RD + KRS Q+S+ P++T G
Sbjct: 119 SSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPG 167
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 223 CGAWWRGAGTWPSSATPXPQRCPPDDAAS 309
CG+ G G SS P P P DD+AS
Sbjct: 219 CGSRTSGPGGGGSSGAPGPSHGPRDDSAS 247
>08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597
Length = 184
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 175 VVGATRASSTSVTWARCGAWWRGAGTWPSSATPXPQRCPP 294
++ + +SS T R + GAG+ +TP PQ+ PP
Sbjct: 67 LIPVSSSSSVDSTGVRLYSHLSGAGSAGGDSTPPPQQSPP 106
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 401 RQGPRIGPDGAGESYRTR 454
R P GPDG ESYRT+
Sbjct: 823 RDRPMAGPDGVKESYRTK 840
>06_03_0857 + 25443251-25444429
Length = 392
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 340 RSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPP 239
R G R R ++ RRR A +A ++A PPP
Sbjct: 201 RGGGARGRGRSRRRRAAAAAAPSAPASEAPPPPP 234
>06_01_0413 + 2946703-2947073,2947174-2947183
Length = 126
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 295 DDAASSGRATSCPTTCNLYVHTAP-APKCNC 384
D SGRA P CN+ V P +P NC
Sbjct: 92 DGRVDSGRAAGLPAACNVRVGFIPTSPNFNC 122
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 256 ATSPPPSTMHRTAP-T*PKYCSLASRRQR 173
A +PPPST H TAP P+ S+A+RR R
Sbjct: 2 APAPPPST-HSTAPFATPEVRSVAARRPR 29
>03_05_0505 + 24991699-24991921,24992100-24992665
Length = 262
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +1
Query: 253 WPSSATPXPQR--CPPDDAASSGRATS 327
W A P P+R CPP D GR S
Sbjct: 83 WADPAAPNPRRRICPPGDQIGQGRGCS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,333,563
Number of Sequences: 37544
Number of extensions: 503791
Number of successful extensions: 2073
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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