Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40012
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749...    80   2e-15
09_06_0122 + 20990754-20991263,20992635-20992748                       28   6.3  

>01_03_0155 +
           13274537-13274741,13274827-13274864,13274909-13274968,
           13275117-13275176,13277072-13277146,13277233-13277346
          Length = 183

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
 Frame = +3

Query: 279 PYTESVDFLEDLVIEFITETTHRAMEVG-RTGRVQVEDIIFLVRKDARKYARVKDLLTMN 455
           P  E+V  +ED+V+E++T+  H+A  V  + G++  ED ++L+RKD RK  R  +LL+MN
Sbjct: 102 PLPETVALVEDIVVEYVTDLVHKAQNVASKRGKLLTEDFLYLIRKDVRKLHRATELLSMN 161

Query: 456 EELKKARKAFD 488
           EELK+ARKAFD
Sbjct: 162 EELKQARKAFD 172


>09_06_0122 + 20990754-20991263,20992635-20992748
          Length = 207

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 405 RKDARKYARVKDLLTMNEELKKARKAFDEVKYVEDNS 515
           R  ARK ARV +L T  E+LK+  K    VKY + +S
Sbjct: 138 RSRARKQARVNNLETEVEQLKQENKML-RVKYEQGHS 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,513
Number of Sequences: 37544
Number of extensions: 236446
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)