Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    32   0.42 
09_02_0596 - 11070744-11071137,11071270-11071459,11073261-110733...    29   5.1  
04_03_0664 + 18501248-18502802,18503370-18505054                       29   5.1  
01_01_1106 + 8750597-8754031                                           28   9.0  

>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 359 GQGCWFIIPNHANIINVA-YFQQYLFQ*TFIENSNVVFMLGSICK 228
           G GC   +  + N+ N+   F  Y+F    IE +N++FM G + K
Sbjct: 13  GMGCGVYVAQNYNVPNIKKLFNTYVFMAKHIEETNMMFMNGEVGK 57


>09_02_0596 -
           11070744-11071137,11071270-11071459,11073261-11073387,
           11073559-11073821,11075779-11075797
          Length = 330

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 512 KDVLHILYEYLKTFEVSDYIRAYE 583
           KD L ++YEY+ +  +SDY+R  E
Sbjct: 116 KDHLALVYEYMSSGNLSDYLRGLE 139


>04_03_0664 + 18501248-18502802,18503370-18505054
          Length = 1079

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 304 IFSSICSNKLSLKTLMLYSCWVLFVKPFQITKGTVTIKYNKILT 173
           + +S+C    SL TLMLY C +  + P ++ K  + +   +I++
Sbjct: 841 LVNSLCG-LTSLTTLMLYGCDIAALPPVEVCKSLIALSCLEIVS 883


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 283 NKLSLKTLMLYSCWVLFVKPFQIT 212
           N  SLKTL+L+ CW L   P  IT
Sbjct: 683 NLHSLKTLILFQCWSLRKLPESIT 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,315
Number of Sequences: 37544
Number of extensions: 224240
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)