Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30037
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    74   8e-14
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.7  
10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175     28   5.1  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   8.9  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = +3

Query: 72  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 248
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLI 59


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 36  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 158
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
          Length = 458

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = -1

Query: 275 QHPLQSRVGDQVTDIDAFQGFGEQT-WPIWLYIYSRRFQD---GG----NFLTSYGNIII 120
           QH + ++VGD +T ++ F G   +  W  W+      +++    G    NF     NIII
Sbjct: 349 QHNIGNKVGDMITYLETFLGESAKVLWEQWVEKNPNNYEELKRAGSNPHNFANIVSNIII 408

Query: 119 HQD 111
            +D
Sbjct: 409 AED 411


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 144 HQLRQHHHPPG*EQSKH 94
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,679,270
Number of Sequences: 37544
Number of extensions: 195694
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)