Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30034
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 141 6e-34
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 139 2e-33
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 137 7e-33
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 2e-06
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 33 0.29
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 33 0.29
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 31 0.67
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 31 0.67
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 31 0.67
10_08_0622 - 19337470-19339008 30 1.5
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 30 2.0
03_01_0281 + 2160480-2162003 29 2.7
10_08_0621 + 19328357-19329545,19329967-19329986 29 4.7
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 29 4.7
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277... 28 6.2
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 8.2
06_03_0265 - 18923597-18924367,18924459-18924704 28 8.2
01_06_0325 - 28488446-28489369 28 8.2
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 141 bits (341), Expect = 6e-34
Identities = 68/93 (73%), Positives = 77/93 (82%)
Frame = -1
Query: 534 RLSHGPEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVT 355
R G +K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+T
Sbjct: 21 RFKSGRKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRIT 79
Query: 354 GGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 256
GGMKVKADRDE+SPYAAMLA+QDVA++CK LGI
Sbjct: 80 GGMKVKADRDESSPYAAMLASQDVAQRCKELGI 112
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/49 (55%), Positives = 28/49 (57%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
ALHIKLRA GAQ MKIGRIEDVTPVP+DST
Sbjct: 114 ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 139 bits (337), Expect = 2e-33
Identities = 67/89 (75%), Positives = 76/89 (85%)
Frame = -1
Query: 522 GPEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 343
G +K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMK
Sbjct: 3 GRKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 61
Query: 342 VKADRDEASPYAAMLAAQDVAEKCKTLGI 256
VKADRDE+SPYAAMLA+QDVA++CK LGI
Sbjct: 62 VKADRDESSPYAAMLASQDVAQRCKELGI 90
Score = 35.1 bits (77), Expect = 0.054
Identities = 27/60 (45%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Frame = -3
Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI-----------EDVTPVPSDST 107
ALHIKLRA GAQ MKIGRI EDVTPVP+DST
Sbjct: 92 ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 137 bits (332), Expect = 7e-33
Identities = 66/86 (76%), Positives = 74/86 (86%)
Frame = -1
Query: 513 KNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 334
K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKA
Sbjct: 5 KTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63
Query: 333 DRDEASPYAAMLAAQDVAEKCKTLGI 256
DRDE+SPYAAMLA+QDVA++CK LGI
Sbjct: 64 DRDESSPYAAMLASQDVAQRCKELGI 89
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 360 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 268
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 360 VTGGMKVKADRDEASPYAAMLAAQDVA 280
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYR 616
KC M+RNPRKV WT YR
Sbjct: 35 KCHKNFKMKRNPRKVKWTKAYR 56
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYR 616
KC M+RNPRKV WT YR
Sbjct: 73 KCHKNFKMKRNPRKVKWTKAYR 94
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
KC+ R P K+TWT +YR++ KK
Sbjct: 63 KCKRYFHNRLKPAKLTWTAMYRKQHKK 89
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
KC+ R P K+TWT +YR++ KK
Sbjct: 37 KCKRYFHNRLKPAKLTWTAMYRKQHKK 63
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
KC+ R P K+TWT +YR++ KK
Sbjct: 1047 KCKRYFHNRLKPAKLTWTAMYRKQHKK 1073
>10_08_0622 - 19337470-19339008
Length = 512
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 485 WTSSLATLFFSGPWLSL*LES*KCEAAHLMRRNPRKVTWTVL-YRRKFKKGQEEG 646
+ S ++FF PW++ L + EAAH +RR +++ ++ RR++K+ +G
Sbjct: 209 YISRRMSVFFFFPWITKHLFRGRLEAAHALRRRQKELFVPLIEARREYKRLASQG 263
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +2
Query: 62 KSRLQPASSSATLPTGRV*WYGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTEL 241
KS++ S G V YGG I AN + +S R++ L F+ ++
Sbjct: 571 KSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKM 630
Query: 242 YVQGLMPRVLHFSA 283
QG+ P V+ FSA
Sbjct: 631 VQQGVRPNVVTFSA 644
>03_01_0281 + 2160480-2162003
Length = 507
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 122 YGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVQGLMPRVLHFSATSCAAN 301
+G IFN ++ L+ R R FVS S + L+P + HF+AT + N
Sbjct: 113 FGDGIFNVDGDSWRRQRAKAQLLTCRPRFRAFVSRCSRAKVEKALLPLLAHFAATGESCN 172
Query: 302 I 304
+
Sbjct: 173 L 173
>10_08_0621 + 19328357-19329545,19329967-19329986
Length = 402
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 485 WTSSLATLFFSGPWLSL*LES*KCEAAH-LMRRNPRKVTWTVLYRRKFKKGQEEG 646
+ S ++FF PW++ L + EA H L+RR + RR++KK +G
Sbjct: 94 YISKKTSVFFFLPWITKHLFRGRLEAGHALLRRQKELFVPLIEARREYKKLASQG 148
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 351 GMKVKADRDEASPYAAMLAAQDVAEKCKTLGIRPCT*SSVLLVET 217
G+ +K++ D P ++ +DV E+CK +SVLL T
Sbjct: 341 GLMLKSNMDSGEPSNLRMSTEDVIEECKLFYFAGMETTSVLLTWT 385
>05_01_0354 +
2770515-2770655,2770767-2771380,2772152-2772341,
2772570-2772634,2772719-2773214
Length = 501
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 366 R*FPGRINQ*HERMCH*MKRKCVLHQTLFRPLNAGARGSPGPPL*QLCFSRGH 524
R +PGR+ E M M R + ++T + G GSP PPL + C +R H
Sbjct: 189 RRYPGRVPD-VELMFDCMDRPAI-NRTDYGGGGDGDHGSPPPPLFRYCTTRNH 239
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 471 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 340
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 385 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 290
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>01_06_0325 - 28488446-28489369
Length = 307
Score = 27.9 bits (59), Expect = 8.2
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = +2
Query: 80 ASSSATLPTGRV*WYGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVQGLM 259
+SS + LP+G YG + L + K +C L ++RG C S + T L G +
Sbjct: 221 SSSQSALPSGE---YGQVLKKGFELAWKSRKDKQCNLCEQSRGQCAYSQNRTFL---GCL 274
Query: 260 PRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRA 367
S+T C ++ + D S F PP +A
Sbjct: 275 CADGKVSSTDCTSSKSFDADPS-----FFSPPFCKA 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,251,266
Number of Sequences: 37544
Number of extensions: 415642
Number of successful extensions: 990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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