Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30033
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 87 2e-17
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 81 8e-16
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 68 6e-12
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 28 5.7
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 28 7.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 86.6 bits (205), Expect = 2e-17
Identities = 36/56 (64%), Positives = 47/56 (83%)
Frame = +1
Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
G P LKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVG 195
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNLR 511
+ RK+LQL RLRQI NGVF+++NKAT+NML EPY+A+GYPNL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 145
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +3
Query: 258 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
+E++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 61 QEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 97 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 252
K VPESVLK + L + A++ ++ IF RA+QY +EY
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEY 58
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 6/62 (9%)
Frame = +1
Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFT 654
G P LKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198
Query: 655 VG 660
VG
Sbjct: 199 VG 200
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNLR 511
+ RK+LQL RLRQI NGVF+++NKAT+NML EPY+A+GYPNL+
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 144
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +3
Query: 258 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
+E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 60 QEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 109 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRSR 261
VPESVL+ + + + +I+ ++ IF RA+QY +EY ++
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQ 60
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/56 (50%), Positives = 42/56 (75%)
Frame = +1
Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
G P LK+V++L+YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVG 197
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +2
Query: 380 VRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNLR 511
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNL+
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK 147
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 175 TLKRRSSAIKKKREIFKRAEQYVKEYRSRNVMKSD 279
TL+ R+ IK KRE+F+R KE+R + +++ D
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQELLQVD 180
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 650 KISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLANPRLYTNSRTLLSWGIPKQC 483
K SW+ S + LC + ST L V+ + ++ +T++ +L W + QC
Sbjct: 1511 KCSWLGS---VKLCACPVVSTSYLRVLDLMLDVARTGKSGHTDAIQILLWELSYQC 1563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,374
Number of Sequences: 37544
Number of extensions: 324991
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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